CI01000299_06257032_06266210 (CUL4A)


Basic Information

Item Value
gene id CI01000299_06257032_06266210
gene name CUL4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6255857 ~ 6266210 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_06257032_06266210.mRNA
GCCGTGGAGAATCTCTGCTCGTATAAAGTGTCGCCCATGCTGTACAAGCAGCTGCGTCAAGTGTGTGAAGATCACGTTCGGGCTCAGATCCATCAGTTCAGAGAATATCCTTCATCAATCATGATCCGCAGTATTTTCCTCTTCCTGGACCGGACGTACGTCCTCCAGAACTCGCTGCTGCCGTCCATCTGGGACACGGGGCTGGAGTTGTTCCGGACGCACATCGTGAGCGACAGCGGCGTTCAGAGCCGGACGGTGGAGGGAATCCTGGAGCAGATCGAGCGCGAGCGCAACGGAGAGACGGTGGACCGCAGTCTGCTGCGGAGCTTACTGGGCATGCTCTCAGACCTGCAGGTGTACAAGGACTCGTTCGAGCAGCGGTTTTTAACGGAGACGACCCGTCTGTACGCCGCCGAGGGTCAGAGGCTCATGCAGGAGAGAGAGGTTCCCGAGTATCTTCATCATGTGGCGCGGCGTCTGGAGGAAGAGAACGACCGCGTCATCAGTTATTTAGATCAGAGCACACAGAAGCCGCTCATCGCCGCTGTGGAGAAGCAGCTGCTGGGCGAACACATGACCGCCATTCTACAGAAAGGCCTGCAGACGCTGCTGGACGAGAACCGTGTGTGTGAGCTGACGCTGCTGTACGAGCTCTTCAGTAAAGTCAAGGGCGGCCTGACGGCGCTGCTGCAGTCCTGGAGAGACTACATCAAGAGCTCCGGCGGAGAGATCGTGAGTTCTCCAGAGAAGGATAAAGAGATGGTTCAGGAGCTGCTGGACTTCAAGGACAGGATGGACCACGTGAGCCAGCGCTGCTTCCAGAGGAACGAAACCTTCATCAATGCCATGAAGGAAGCCTTCGAGAACTTCATCAACAAGAGACCCAACAAACCCGCCGAGCTCATCGGGAAGGACGTGTTCGAGGCCTTCTATAAGAAGGATCTGGCCAAGCGTCTGCTGGTGGGCAAGAGCGCCTCGGTGGACGCAGAGAAGTCCATGCTGTCCAAACTCAAACACGAGTGTGGAGCAGCGTTCACCAGTAAACTAGAGGGGATGTTCAAAGACATGGAGCTGTCTAAGGACGTCATGATCCAGTTCAAACAGATGGTGAAGCTTCAGGAAGTGTTTAAGCTGTTCTATCTGGGGAAACACAGCGGACGTAAACTGCAGTGGCAGCCCACACTGGGTCACGCGGTGCTGAAGACTGAGTTTAAAGAGGGTAAGAAGGAGCTGCAGGTGTCTCTGTTTCAGACTCTCGTCCTGCTCATATTCAACGAGGCTGACGAGTGTTCGGTGGAAGAGATCCGCGCAGCCACAGGCATCGAGGACGGCGAGCTCAAGCGCACGCTTCAGTCTCTGGCCTGCGGGAAAGCGCGAGTCCTCAATAAAACGCCCCGTGGGAAAGACGTGGAGGACGCCGACCGCTTCCACTTCAACAGTGACTTCAGACACAAACTCTTCCGTATTAAGATCAACCAGATCCAGATGAAGGAGACGGTGGAGGAGCAGGTGAGCACCACCGAGCGAGTGTTTCAGGACCGACAGTATCAGATCGACGCGGCGGTGGTGAGGATCATGAAGATGAGGAAGACCCTGAGCCACAATCTGCTGGTGTCTGAACTCTACAACCAGCTCAAGTTCCCCGTCAAGCCGGCAGACCTGAAGAAGCGCATCGAGTCGCTCATCGACCGGGATTACATGGAGCGGGACAAAGAGAACGCCAACCAGTACCACTATGTGGCGTGAGCCGCTCGTTCTTCACCTCCTCACAAGGGCTTCTGGGCCGGACGGGTCCACGCTCGGCTCTCGGGGACAGACGGGACTTCAGCATGATTGCAAATGAGATGCACTTTCTTTTCTTTGTGTTTGTTGTTCTTGAACTTTCTGTTTAGCGCGTGTGTCGAGTTTCTTCTACTGTAGCGTCACGTTACGTGTGTTTCTCTCTGGCTTCGGTCCTCATGATGACGGAATCATGTTGATGTGAGTTCTGATGCTGCAGGGTTTGTCATGTACCCGCTCAGGCAACGGAAACCAGACAGGATTTCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACTGCTGAGACTCAATGCAGCCTCAAACTCGTTGTAATGGACAGAAATTATTCTTTTGATAACATGTGAGTGTATGTTTGTATTTGTGTGTGTGTGTGTGTGTATTTGTATTTGTGTGTCAGAGTGTGTGTTTATATTTGTGTGTGTTTGCGAGTGTGTATGTGAGAGTGTTTGTATTTGTGTCTGAGAGTGTGTTTGTATTTGTGAGTGTTTGCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGTGTGTGTTTGTATTTGTGTCTGAGAGTGTGTGTTTGTATTTGTGAGTGTGAGTGAGATTGAGTGAGTGTGTCTATATGTTTGCGTGTGTCTGTGTGTGTGTGTGTGTGTTTGTATGTGTGTGTGTTTGTATGTGTGTGTGTTTGTATGTGTGTGTGTTTGTATGTGTGTGTTTGTATGTGTGTGTGTCTGAGTGTGTGTGTCTGTGTCTGTATGTGTGTTTGCGTCTGTGTCTGTGAGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTTTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGAGTGTGTGTTTGTGTGTGTGTGAGTGTGTGTTTGTGTGTGTGTGTTTGCGTCTGTGTCTGTGAGTGTGTGTTTGTGTGTGAGTGTGTGTTTGTGAGTGTGTGTGTGTCTCATCAACTGTATTCTGTCACATACACAGTTTTGTAGAGCAGAGGATTCTATTCTTTGTAAGCGGGCAAAGATATGAAAGAATAAA

Function

symbol description
cul4a Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic pectoral fin morphogenesis; heart development; and otic vesicle morphogenesis. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex. Is expressed in brain; heart; and pectoral fin. Orthologous to human CUL4A (cullin 4A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_06257032_06266210.mRNA True 2921 mRNA 0.51 15 6255857 6266210

Neighbor

gene id symbol gene type direction distance location
CI01000299_06242885_06246604 LAMP1 coding downstream 9253 6241996 ~ 6246604 (-)
CI01000299_06208641_06214104 TMCO3 coding downstream 41753 6208612 ~ 6214104 (-)
CI01000299_06197276_06199730 TFDP1 coding downstream 56127 6196606 ~ 6199730 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding downstream 60842 6185488 ~ 6195015 (-)
CI01000299_06145156_06154533 NA coding downstream 101324 6144955 ~ 6154533 (-)
CI01000299_06268189_06268676 NA coding upstream 1979 6268189 ~ 6269395 (-)
CI01000299_06274590_06278765 PROZ coding upstream 8217 6274427 ~ 6279132 (-)
CI01000299_06281861_06289368 NA coding upstream 13173 6279383 ~ 6290025 (-)
CI01000299_06291499_06294321 F7 coding upstream 24339 6290549 ~ 6294875 (-)
CI01000299_06295715_06298755 F7 coding upstream 29403 6295613 ~ 6298775 (-)
G407939 NA non-coding downstream 23582 6226412 ~ 6232275 (-)
G407923 NA non-coding downstream 33478 6220766 ~ 6222379 (-)
G407975 NA non-coding downstream 72322 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 109933 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 141367 6108478 ~ 6114490 (-)
G407986 NA non-coding upstream 123166 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 125834 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 150916 6417126 ~ 6432767 (-)
G408009 NA non-coding upstream 173311 6439521 ~ 6439736 (-)
G408010 NA non-coding upstream 174037 6440247 ~ 6440470 (-)
G407805 NA other downstream 419868 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 799749 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1327039 4913373 ~ 4927715 (-)
G407413 NA other downstream 1705136 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 265791 6526127 ~ 6532048 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000012 cul4a coding NC_007112.7 CM002885.2 157793 ~ 167398 (+)
bowfin (Amia calva) AMCG00014425 cul4a,LOC102780633 coding CM030128.1 CM030128.1 13791149 ~ 13813879 (+)