G404372


Basic Information

Item Value
gene id G404372
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1070607 ~ 1075891 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU464792
GGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGATGTATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCGATTCAAACACTTGGGAGAGCTTCACATTGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU464792 True 583 TUCP 0.44 2 1070607 1075891

Neighbor

gene id symbol gene type direction distance location
CI01000299_01057889_01063623 NA coding downstream 6984 1057820 ~ 1063623 (-)
CI01000299_01003547_01034507 NA coding downstream 35795 1003319 ~ 1034812 (-)
CI01000299_00670925_00672195 NA coding downstream 396982 670680 ~ 673625 (-)
CI01000299_00452374_00452868 NA coding downstream 617739 451341 ~ 452868 (-)
CI01000299_00448948_00449565 NA coding downstream 620850 448863 ~ 449757 (-)
CI01000299_01114487_01122666 NA coding upstream 37859 1113750 ~ 1124230 (-)
CI01000299_01222994_01268707 NA coding upstream 146968 1222859 ~ 1270326 (-)
CI01000299_01338052_01368900 NA coding upstream 261981 1337872 ~ 1369376 (-)
CI01000299_01419938_01421048 NA coding upstream 343638 1419529 ~ 1421048 (-)
CI01000299_01693958_01696561 SLITRK5 coding upstream 617033 1692924 ~ 1697305 (-)
G404169 NA non-coding downstream 465025 605073 ~ 605582 (-)
G404168 NA non-coding downstream 469606 596568 ~ 601001 (-)
G404166 NA non-coding downstream 484260 586146 ~ 586347 (-)
G404162 NA non-coding downstream 514544 555853 ~ 556063 (-)
G404293 NA non-coding upstream 49845 1125736 ~ 1127433 (-)
G404380 NA non-coding upstream 55152 1131043 ~ 1131262 (-)
G404457 NA non-coding upstream 71565 1147456 ~ 1147727 (-)
G404484 NA non-coding upstream 121550 1197441 ~ 1198241 (-)
G404486 NA non-coding upstream 123466 1199357 ~ 1200671 (-)
G404784 NA other upstream 583764 1659655 ~ 1660000 (-)
G404976 NA other upstream 779748 1855639 ~ 1880988 (-)
G405053 NA other upstream 941796 2017687 ~ 2018050 (-)
G407413 NA other upstream 3400103 4475994 ~ 4550721 (-)

Expression


Co-expression Network