G405053


Basic Information

Item Value
gene id G405053
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2017687 ~ 2018050 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU465509
TAAGGATTTGAGCGAGTTTGACAAGGGCCAAATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTGCAGCTCTTGTGGGGTGTTCCCGGTCTGCAGTGGTCAGTATCTATCAAAAGTGGTCCAAGGAAGGAACAGTGGTGAACCGGCGACAGGGTCATGGGCGGCCAAGGCTCACTGATGCACGTGGGGAGCGAAGGCTGGCCCGTGTGGTCCGATCCAACAGACGAGCTACTGTAGCTCAAATTGCTCAAGAAGTTAATGCTGGTTCTGATAGAAAGGTGTCAGAATACACAGTGCATCACAGTTTGTTGCTTATGGGGCTGCATAGCCGCAGACCAGTCAGTGTGCCCATGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU465509 True 364 TUCP 0.53 1 2017687 2018050

Neighbor

gene id symbol gene type direction distance location
CI01000299_01693958_01696561 SLITRK5 coding downstream 320382 1692924 ~ 1697305 (-)
CI01000299_01419938_01421048 NA coding downstream 596639 1419529 ~ 1421048 (-)
CI01000299_01338052_01368900 NA coding downstream 648311 1337872 ~ 1369376 (-)
CI01000299_01222994_01268707 NA coding downstream 747361 1222859 ~ 1270326 (-)
CI01000299_01114487_01122666 NA coding downstream 893457 1113750 ~ 1124230 (-)
CI01000299_02670695_02682116 NA coding upstream 652546 2670596 ~ 2682116 (-)
CI01000299_02723315_02728716 MNX2B coding upstream 705170 2723220 ~ 2728753 (-)
CI01000299_02761916_02788258 FN1B coding upstream 743364 2761414 ~ 2788437 (-)
CI01000299_02833341_02845817 NA coding upstream 815040 2833090 ~ 2845870 (-)
CI01000299_02850281_02876863 NRP2A, NRP2 coding upstream 832231 2850281 ~ 2876863 (-)
G405051 NA non-coding downstream 373 2017084 ~ 2017314 (-)
G405049 NA non-coding downstream 10958 2006176 ~ 2006729 (-)
G404800 NA non-coding downstream 311447 1706027 ~ 1706240 (-)
G404765 NA non-coding downstream 326406 1686047 ~ 1691281 (-)
G404778 NA non-coding downstream 381730 1635677 ~ 1635957 (-)
G405067 NA non-coding upstream 11555 2029605 ~ 2030051 (-)
G405068 NA non-coding upstream 12151 2030201 ~ 2030437 (-)
G406539 NA non-coding upstream 39620 2057670 ~ 2057886 (-)
G406551 NA non-coding upstream 76993 2095043 ~ 2095356 (-)
G406715 NA non-coding upstream 513742 2531792 ~ 2532008 (-)
G404976 NA other downstream 136699 1855639 ~ 1880988 (-)
G404784 NA other downstream 357687 1659655 ~ 1660000 (-)
G404372 NA other downstream 941796 1070607 ~ 1075891 (-)
CI01000299_00670925_00672195 NA other downstream 1344831 670680 ~ 673625 (-)
G407413 NA other upstream 2457944 4475994 ~ 4550721 (-)
CI01000299_04913779_04927715 NA other upstream 2907918 4913373 ~ 4927715 (-)
CI01000299_05428160_05443433 APP, APPA other upstream 3423287 5427661 ~ 5443433 (-)

Expression


Co-expression Network