G407975


Basic Information

Item Value
gene id G407975
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6183135 ~ 6183535 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468770
GCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATTGATAACTGGTACATTGTTTGGCTGCACAGCAGCTCTTAAAGAATAGTGTCAATGCAGGCAGATCAAAGCACTGTTGAATATCAAATGTCAAGTCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCATCAGGTGACATCAGGTGGCAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTCTGGCCAACAGTGCTTTGTTACGATTCAGGTAGCTATCATAAGTCCGACAGGATCGCAACATTCAAAGTAT
>TU468771
TGTAAAGTCAAGTCAAGTCACCTTTATTTATATAGCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATTGATAACTGGTACATTGTTTGGCTGCACAGCAGCTCTTAAAGAATAGTGTCAATGCAGGCAGATCAAAGCACTGTTGAATATCAAATGTCAAGTCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCATCAGGTGACATCAGGTGGCAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTCTGGCCAACAGTGCTTTGTTACGATTCAGGTAGCTATCATAAGTCCGACAGGATCGCAACATTCAAAGTAT
>TU468772
GCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATTGATAACTGGTACATTGTTTGGCTGCACAGCAGCTCTTAAAGAATAGTGTCAATGCAGGCAGATCAAAGCACTGTTGAATATCAAATGTCAAGTCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCATCAGGTGACATCAGGTGGCAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTCTGGCCAACAGTGCT
>TU468773
TGTAAAGTCAAGTCAAGTCACCTTTATTTATATAGCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATTGATAACTGGTACATTGTTTGGCTGCACAGCAGCTCTTAAAGAATAGTGTCAATGCAGGCAGATCAAAGCACTGTTGAATATCAAATGTCAAGTCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCATCAGGTGACATCAGGTGGCAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTCTGGCCAACAGTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU468770 False 367 lncRNA 0.45 1 6183135 6183501
TU468771 False 401 lncRNA 0.43 1 6183135 6183535
TU468772 False 311 lncRNA 0.46 1 6183191 6183501
TU468773 True 345 lncRNA 0.44 1 6183191 6183535

Neighbor

gene id symbol gene type direction distance location
CI01000299_06145156_06154533 NA coding downstream 28602 6144955 ~ 6154533 (-)
CI01000299_06130943_06144384 NA coding downstream 38267 6129073 ~ 6144868 (-)
CI01000299_06037407_06054548 TPP2 coding downstream 128587 6036217 ~ 6054548 (-)
CI01000299_05974659_05985294 NA coding downstream 197529 5974391 ~ 5985606 (-)
CI01000299_05946615_05949088 NA coding downstream 233901 5946333 ~ 5949234 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding upstream 1953 6185488 ~ 6195015 (-)
CI01000299_06197276_06199730 TFDP1 coding upstream 13071 6196606 ~ 6199730 (-)
CI01000299_06208641_06214104 TMCO3 coding upstream 25077 6208612 ~ 6214104 (-)
CI01000299_06242885_06246604 LAMP1 coding upstream 58461 6241996 ~ 6246604 (-)
CI01000299_06257032_06266210 CUL4A coding upstream 72322 6255857 ~ 6266210 (-)
G407971 NA non-coding downstream 37211 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 68645 6108478 ~ 6114490 (-)
G407912 NA non-coding downstream 75882 6099848 ~ 6107253 (-)
G407909 NA non-coding downstream 83677 6093291 ~ 6099458 (-)
G407949 NA non-coding downstream 91254 6091491 ~ 6091881 (-)
G407923 NA non-coding upstream 37231 6220766 ~ 6222379 (-)
G407939 NA non-coding upstream 42877 6226412 ~ 6232275 (-)
G407986 NA non-coding upstream 205841 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 208509 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 233591 6417126 ~ 6432767 (-)
G407805 NA other downstream 347146 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 727027 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1254317 4913373 ~ 4927715 (-)
G407413 NA other downstream 1632414 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 348466 6526127 ~ 6532048 (-)

Expression


Co-expression Network