G407939


Basic Information

Item Value
gene id G407939
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6226412 ~ 6232275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468734
TGAAAAATGGCATGTATTAAATGACAAAAATGAAGTGTCTCAGACTTTTTGGCCCCTCTGTATATTAAAGTACCGTGGTATTACCACTACAGTAGCTTGTAAAGGTTGTGTGGGCAGTTAATGTGTGTCTTTGTTGTTAATTATAAAGGTTCACTACTATAATGATTAACTCCCCTCAGAAACAGTATTTTTATGATGGTTTACAGGTTGATTGTGTCAGTGTTTCTGTTTGGCTGTCCTAGTAAATCCTGCTGATCCGGGTCCAGTTGAGGCCGGTGAACTGAGTGGATTAACCACAGACGTTTGATTATTCCAGGAACACAGACTCCATGTTTCCGAGCGTGTGTTTTCTCTGAACTGATGGGTGATTTGCCGTGTTTTGAGATGGAAATCTGCTGTTATTGAAGTGCCTGTTTATTCCTGTCGTTCCATATTTGCCCGTCTATTCCGGTCAGTGTTTGACAGTATTAACCGGGGGAAATGAGGTCGGCCGGTTAAACATGCAGCATATGCAGCACCTTAAACTGATCAGATTAACTGGAGCACACGCTGTGATCTGACAGATGAGATGAACAACAGATACACATAAAAACATATACGTGTCATGAGTTAGTCATGTGATCCTGCTGTGGTCTGACACACCTTTATTATGATCAGGGTGTGTCTGTGTTTATAGAGCTCACGCTGACTTCAACCGTTTACACGTGAATTCACATGAGAGACATTTAGAAGCAGACGTTGATCATGATTATTGATGGTTTCTATAGATGTGTGGCCTGTTAGTTCACTTTACTGTTTACTAATTCTGCATAATTTAAAGTTTTTTATTTAGTTTTCTCCCTTTTATGAATTGCACAACACAGAAACAGAATCACCGAACAGCAGGAATCTGAGGAAGTGAATAAACTCCGACAGCTGGTTATATCTTACCCAGAACTCACACAAACCAACTGTTTTGCACTGTGTGAAAATAAACACAAAAGTCGATTTACATGAGCCCCACAGCCACTGTTTTGTGAATGAAATATATTGTTTGTTGTGCGTAAATTTAGACAAAAAATAAGCCTGTTCAGACCAAGAACGATAACTATATTTGGGTGAATGGGTCATTTTTTTTATCCAAAGGCCTTAATAATAATAAAAAACAAAGATATGACATCCAAAGTATGTAAGGTAGTACAACTAGATCTCTTTTATTGAATCCAAAAGGTTTTAATTATATTTTACTACATATAAAGGTATTTTAAAGATTTTTAAGTGACAAAAGGTAATTCGGTTTAACCGTCCAAAGGCCAATACACCATTTCATTTGTGATTAAAATATCTTAAAATGTAATAAATGTATATGTTTTTTATTCTGGCATGATTTTATAACATCATATATCAACATAGTGCAAAATGGTATTAAAATTATGTGTAGAAGTCGTTGCTTTGTTATGAGAAAGAATGTCCGGAAAAATTAATTTCATTGATGTCATTCGGAGTAACCAATATAAAGGGGCCATTTTGGATCAAGTCATGCGGTCAATATCATGTGACAGGATGTGACATCATTCAGACACCTGCAAAGGACCACATGGTCATGAAGCAAAGTAACTAACTCTTTCTTAACTATCTGAAAAATTCATGTTTTCACTTGATCATACGCATGTCCCGAAACATCATTTCATTCGGTACAACCGCTATAAAACATGGAAAATGTTGTAATATTTTAAAAACTTGTACTAAATATAAAATGTTTAATTGTTCTTTTGCTAGCTAGCTAGATATCAGCCTGTTAGCATTGTTTGAAAATATCGTCATTCGGTGTAACCAAAGTTTTGGTTAAACCGAATGACTTTTTTGGTGACAAATTTTGTCCATCTTGTGTTAATTGATTATAAAAGCCACATAATCTCATTAATACTTAATAAACCTTCAAAATTAATTATATCTCCATTATGTTTTTACACTTTTAAAAAGCTTATTCATCAATGACCCATTTGAGTCCACACTAACGAGCGATAACGGTCTGTTTATTCTGAGCTGCGATTACATGTTTTTGCTGTTCTTGTTGCATTTACACGCTTTAACCAGCAGATGTCCTCAGCTTTCTATGTTTCAAGTGTAATGATCTAATCTAACAGTGAATTTATCTGACGAAGTCAATATAGTGGAATAAAAACAACACCTAGTCTTTTTCACTGCAGCTTCAAAGAAAGTAAGACAATGTTGTCGAAACTAGCGCTGGATGCCTGAGGTAATTTTATTTTACACTGTTTGCTAATGATCTCATCTCCATTTATTATACTTCTCTCGCCGTTTATTCCATTTATGACCGATTGTTTTCCATATTTTCTTTAAAGTATCATTGATTAAAAAAGGGGGTTTGACTCGTCAAAGAGGATTTTTCTGGACCTCAGCGATAGATTTAAAATGGCAGATGTGCGCCATTTTAAACGCTCGAGCCGTTAAATTCGAATGGATTCTGATTGGCTGTCAGTGTGGAAACAGCTGGAAAAAATAATTCTGAAAGTGATATCGTTTCTCTATATCGTTATCGTTACAGCTATTCTTTTATATTTAGAACTATATCTATCGTTATCTTTACAGTCATCATTCTTGGTGTGAACGGGCCTAAAAGAGTCCACAACTATAATGATAACGGCACAGAATCACTTTCAGAACGATTTTTTTTTCCAGATAAAACGATAAAAACACTGACAGCCAATCAAAATCCATCCAGCGCGAGCATTTAAAGCGACAGACTACAAAACTGAGAGTAAACAGAACGATATTGTGCGTTAATGTGAACGCTAGTTATCGTTCTTGTTGTGAATGTGCCTTAAACCCTGTATTTTCTTGGTGAACGTTAGCTAAAACGTTAAGGAAATGTTTTCTGTATTTTATCATTCTTCAAACATTATCGAAACGGTACTTTTGAATGTTCTGAAACAAGTAAAAACATTTAGAAAACGTTAGACGTTTCAGAAAAATGTTCCATGAACGATGTATAAATAATGTTTTGAGAACATTATTAAAGACCATATAACATTGAACAAACGCTACTGGAAGAACGTTTGAGAGAACGTTCTGAGAACATTCCCTATTGACTGGATATGACTCATCCAACATAGTTGATTTTGGTATAATAAATAATCACATAACAGTCTTCAGAAGTTGAAGGTGTCGGTGAATCGGATGGTTTTGTGGATGTAGGAGCGTCCTTCTGAAGGGCTGCAGTAATTCATGGTCCTGTACTTCGGTGTTTCTCCTGTCGACGGATGACATGCGTTCTCGTCATTCGTTCCAAGAAGGGAAATCTGACCGTCTGAGGAGAAACACTCGTGAGGAGGAAGATCCTGTTCTCCATCAGAGCGTCTGGATGAACTCAAGCTGAGCGAGAGCAGCTCGTCGTCCTCGTGTGTTTCGGTCACAGCGGGTGAGAAGCGGGTGTTTAAAGCGAGCTCTTCTGAAGGCGACGGCGGCGTATCATCCAGATCCCAGCTGTGATCGTCCTGAAGAGCGGCTGAAGGTTGCTTGCAGTTTTCTGAGGTTGTGATTTGTGGCAGATCTTCTCGAGGTTCCTGTAGGATCTGTGTGCTGGAAGTCTGTCCGAGAGGTTTCACTGACGTCCAGACCTCAGGAGACGAGGACAGAGCATCTCCGTTGAGCCGTTCCTCCGCTTGTCTCTCTCTCATCTCTGGACTGAAGGCCTCACTCAGGTCCTCTTTGACATGTGTTCCTGTAGTCTGACATCTGTGTTGCTTCAGTACGTTCAGCGTATGATTCGATTTGCTGTTGTGTTTCTTGATCTTGTACGTCGAATGGTTTAGAGTCTCGAACGCCTTGATGATGCTGTTTAATGCGCCTGTACGCGTCAGTTTCTTTACATTTTTATTCTCCACCGCCGCCGCTGCAAATTTATCCAGGACATCCTGAACCCGGCCTTTTCTCCTCATCCAAGGTCTTGAGTTCGCTCTCAGCCCATTTGTGTCTGTAATACGTCGTTCTCTGGTGTTCAGAGATCCCACTTCTCGTCTGCGGGTGATCGCCGGCTTCGGAGCGCTCTTCAGAAACTTGGATCGGAGGAGCTGGAAGGCGGAGAGACGAGGACCGGCTCGCGCCATCGCTGAAGGAGAGGCCGGTGGCTCCCGGGTTTGGTACAGCAGGAGATTCTCCAGGATGGCCCTGACCTCCGGACGCGTCGAGCGATCCAGGATCAGCCGCTTCACGGATCGCCGGTCCAGCATTGGGATGACGGAGGGCGGCCGGCCGTCTCTCTGATCTCTGTGGAATAAAAGTGTGTTTCTGTGGAGCAACACATCAGACTTCTGCTTGACTTGTGCTTTACCACATATTGTAGTACTGGTCATAAATTAAGATCCTGATAGAGTCCAGCAGGAACCGGACTGATCCCGTAGAGCAGGCCGAACAGACAGCCGGCGATCAGACCCGTCGCGCTGCTCTCACCTGAAACATCACCGATCAGTCAACGTTCACACAACTTCTGATCTAAAGGCTTCCGGTTAAATGACAAGTGTCAATCATTACAAAACAAAACTGTTCATTTAAATTTGATCTAAAACTATTTCAGCTTCATGCGATGGTGTTTTAATGAAGCGTTCCTGACCTCCGTGAAACATGGCCCGTTTGCACAGCTCCTCCCAGCTGGATCCGGCGGCGAGCAGAGCGTCGTACGCGATCATGGGAGCGTCGTGACCCCTGCGGCCCGGACAGCCTTCAGAACTCCAGCGCTTGTACATCTGAACACACACATCAGCACCAGAACCTGTGAGCTCACGCGGGTTCAGTCAGTCCTGTGTGATGAGCTCATGTGAGGAACCCGAAGGACTGGAGTAATTACATGAAGTCACGATTATGAGATAAAAATAAATATGAGACAAAAAGTCTCAATTATAACAGTCAAAATTATGTTGTTAAAAGGTGTAACTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468734 True 4937 lncRNA 0.41 2 6226412 6232275

Neighbor

gene id symbol gene type direction distance location
CI01000299_06208641_06214104 TMCO3 coding downstream 12308 6208612 ~ 6214104 (-)
CI01000299_06197276_06199730 TFDP1 coding downstream 26682 6196606 ~ 6199730 (-)
CI01000299_06185794_06195015 GRK1A, GRK1 coding downstream 31397 6185488 ~ 6195015 (-)
CI01000299_06145156_06154533 NA coding downstream 71879 6144955 ~ 6154533 (-)
CI01000299_06130943_06144384 NA coding downstream 81544 6129073 ~ 6144868 (-)
CI01000299_06242885_06246604 LAMP1 coding upstream 9721 6241996 ~ 6246604 (-)
CI01000299_06257032_06266210 CUL4A coding upstream 23582 6255857 ~ 6266210 (-)
CI01000299_06268189_06268676 NA coding upstream 35914 6268189 ~ 6269395 (-)
CI01000299_06274590_06278765 PROZ coding upstream 42152 6274427 ~ 6279132 (-)
CI01000299_06281861_06289368 NA coding upstream 47108 6279383 ~ 6290025 (-)
G407923 NA non-coding downstream 4033 6220766 ~ 6222379 (-)
G407975 NA non-coding downstream 42877 6183135 ~ 6183535 (-)
G407971 NA non-coding downstream 80488 6145497 ~ 6145924 (-)
G407895 NA non-coding downstream 111922 6108478 ~ 6114490 (-)
G407912 NA non-coding downstream 119159 6099848 ~ 6107253 (-)
G407986 NA non-coding upstream 157101 6389376 ~ 6389644 (-)
G407927 NA non-coding upstream 159769 6392044 ~ 6392356 (-)
G408001 NA non-coding upstream 184851 6417126 ~ 6432767 (-)
G408009 NA non-coding upstream 207246 6439521 ~ 6439736 (-)
G408010 NA non-coding upstream 207972 6440247 ~ 6440470 (-)
G407805 NA other downstream 390423 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 770304 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1297594 4913373 ~ 4927715 (-)
G407413 NA other downstream 1675691 4475994 ~ 4550721 (-)
CI01000299_06526127_06532048 CEP97 other upstream 299726 6526127 ~ 6532048 (-)

Expression


Co-expression Network