G408028


Basic Information

Item Value
gene id G408028
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6541285 ~ 6546201 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU468829
ACATTTTGCCTATATTTATTTTACTTTAAAAGTGCATCAACATAATCAAAATCAAACAATAACCATATGAAATTGATGTAAAAGAAATCTACATTTTAAAGACTACAATGGAAATAACAACAACAAAATTAAAAACATGAAGCACATCTGTCTGATTTTCCACGGTTTCTTCTGGTTTAAAGCCCTTGTAATTTGCTGTCCTCCACTGTTCTGTTGGACGGATAATAAACTTTAAAGGAGAATCCACTTTTTGGAAAAGAACCCGGGTTGATGCACAGGCAGTCTGTGTTGGATATGTTGAAGGGGTCGTATTTGTCAGCGAAGACAATGACATCAGGCACAGGATAAACGCGTAAGGCGTAATCATACGCCCAGTACACTGGACACACGTAGAGCGGGAGCGGCGTCAGGTGACCTTGTGACAGGATGGTTTTCACAAACTGTTGAACAAATGCAAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU468829 True 461 lncRNA 0.38 4 6541285 6546201

Neighbor

gene id symbol gene type direction distance location
CI01000299_06526127_06532048 CEP97 coding downstream 9237 6526127 ~ 6532048 (-)
CI01000299_06522084_06525262 NA coding downstream 16023 6521968 ~ 6525262 (-)
CI01000299_06516832_06521405 NA coding downstream 19880 6516595 ~ 6521405 (-)
CI01000299_06505676_06510021 EED, EED.S, EED.L coding downstream 31141 6505557 ~ 6510144 (-)
CI01000299_06497414_06502931 CK073, HIKESHI coding downstream 38354 6497156 ~ 6502931 (-)
G408023 NA non-coding downstream 49267 6491757 ~ 6492018 (-)
G408022 NA non-coding downstream 49773 6491187 ~ 6491512 (-)
G408021 NA non-coding downstream 51581 6489437 ~ 6489704 (-)
G407924 NA non-coding downstream 76100 6462457 ~ 6465185 (-)
G407937 NA non-coding downstream 82165 6458779 ~ 6459120 (-)
G407805 NA other downstream 705296 5835889 ~ 5835989 (-)
CI01000299_05428160_05443433 APP, APPA other downstream 1085177 5427661 ~ 5443433 (-)
CI01000299_04913779_04927715 NA other downstream 1612467 4913373 ~ 4927715 (-)

Expression


Co-expression Network