CI01000300_08395527_08423749 (CHRNB3B, CHRNB3, CHRNB3A)


Basic Information

Item Value
gene id CI01000300_08395527_08423749
gene name CHRNB3B, CHRNB3, CHRNB3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 8395034 ~ 8426369 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_08395527_08423749.mRNA
AGAAACTGCCTCACTTGCTTCACATTGACAGGGGTAAAATACATGTATTTATGTATTTTATAAATACATACAGCGTATGTATTTATAAAAAAATACATACGCTGTACCGAGTCTTTCCGAAAACAGCCGAGTGCCTGGAGGCATGTCGTTGTGAGCGGAGATAGAGTGACGAGCTGTCACAAGCACGCACAGCTTTTGTGTAGAGATCGGCTGCAAGCTATCAATGGTCTGCTAAACAAATATATTTAAACACACGCAATACACCATTGCGTTATCCATGGATAACTTTTGAATCACTATAATGAATATAGCGTATAGTAAATGATGAATAATTATAATTTATAAATTCACTACGTTCGTGTTGTTTACATTATATGCACTTAGGCGCCTATTGCCCACAAAACAGACATTTGAAGCAGTTTTACTTACCACCTGCGGTTCCGACTCATGACCGGGATCATTACTGCAGTTTCAAACGATCTGTAAATCCAGCGTAGAACTGGGCTTTGTTTTTGAAACCATAAGCGCAGATCCCGAGGGCTCGAACAGCCACGGAAAAACACGAGACATTCTCCATTCATTTTAACCAATAAAAACGCGATTGCAACTATCAGTTTCTATGGTTATTTTAATGACAAATATCGAGAGTACATCAATATAATGCGTGAGAACAAAACTCTCAGCTCCACTTAATGCTGGGTTCTTTGGGAAGTAAGGTTATCTTTCCCTCACAACCAAAAACATACTTCTTTGGTGACAGTGTTGATTTTGTGAAGTCCTGTGACCTGTGCAGCGCTGCCGACGACTTCCATAAAGCCGAACGCGCGTTGATGGGCAAGCTCTAGCTCTCTCTCTGGTTGACGTGTGCACGCACGCCCTTCCGGGAGAAGTGCCCGTACAAGTAATTCCACCCCCGTTTACGTCACTCAGGCCCATACTCGGAAAAAAAAAAAAAAACGAAGTTCGTGAGGATTTGGAAGAGTATTTTTGGCACAGAAATACTCCATCATATGTCCAACTCGTGTTTTGAAACTTTGGCCATGTTTAGCATTATAATCCAACTCTTTAACAGTGTAAATAAGTCAGAATGCATGAAATAGCATTATACCCCCCCTTTAAGTCTTTGTTGTATGCTATCGCTCAGTCAAAAGATCCAAAGACAATAGCGCTCAGCACGGACTTATATAGCAATGTCTCGTTCCCTCCTCTCAGGGAACCATGTTTACACAATTCTTTGGTTCATTTGTAGTGGGGGTTTGGTGTAGTGTAATAAAAACAAATGTTTCCATTATATTGTAATTTTCTGCTCAACACAACCTTGTTTCTACAGCGCCTTTCAGCATGTTTCCTATAACAACATCTGACACTTACATTTTTTGACACTTACACTGACTTTTACATGGTGTAAGAAAGACAGATAAACCACACAAAATCCAATCAGAGCAGTCAGACTGATTTCCAGAAATGAGATTTGAATGGGATTTCAAACCACATTTGAATGTAGCTTGAAATGGATTTGTAAAAACTGCATTTGATTTATTTGCCGTTCACACTTGTTAAATCTGATCGGATTTCAATCAGATATGATCGGATTTGGACTGACAGTCTGAACATTGTGTATGCTTTCTACCAGCAGGGGCTAACAGGGCCGTACCAGGGCCAAAACCTTGACCCCAACACAGCGCTGCAGTGATGGCATATTTTTGTTAGCATCACCCTATTTCCCTCAACAAAAACTCATTTTCCATTGGTTTTTGGATTTTTGCAGAAAATAAGCTCAGTGATAAACAAAAGTTTATGATTCTTATATGTTCTGTTCAACATGATAATCTCACACAACTTTTATGAATTTTGAGGCCTAAATACAATCGCCATAAAAAGCATAGAACAGTAGGTAAAAAACAAATGCAAATAATAATATAAAATAATAATAAAAACTTGCCCCATTGATTTGCACATGCTATGCTAGCTAGCTTATGATAATAAATATTAATAAAATGTTAACAAATAAAAAATAATAATAAATACAATTTTAATAAGTAATTATTTTAATATTACATTATTATTTTTTTATTTAATTTCATGTTAATAATGTTGTTGGGCCTGACTAGGTAAAGTAAGTTGTCGACTTTAAGGACAGTTCTGATTACCTTTTTACTCTGCACAGTGTGTCAATTCGCCAGATGCTGGCTCCTGAAGAGAACCACGTCTTTAAAATCTTTACGTAAAGTACATTTTCGTTTCGAAGACGTTGGTTTGTTTATCCCCTCCCCTTCTCGAGCGCTCATTTCACCCTGCTCCTCTACATCTGCTCCAATGAATGGCATCTTTCTCGACATCACGTAAACGCCGACGGGGGGAGCGAGAGCGTCTTACTCTGGTGTTCGCTTCGGATGGAGCAGGCTAAAAAAATATACCCCGTTGATTATTAATTTATAGATTTATCACACTGCAGGTTGCAGTAGGCTACATCTGATCGTTTTACAAAACGGCCCGGTGTTCAGCCGTATGAATAAAGGACAGCATCTTTACACCCCCCTTTGTCGATGACAGGGACTCACAATTCAAACAACATGAAATAATTCCATTGCACGAAGGAACTAAAGCCTGGAAAGACAGCATGAAGTTACAAATCTCCGGTCTTTTGCTCGTTATGGCAGTAGCGTATGCAACGATAGAGGCCCTAAAATGCACCCCAAACTACCTTGCTTTGACCAGATGGCTTGCTGTAGGGGAGGAGAAGAGGTCGTCTGTTCAACATTTGCGGATGAGGTCTTCTGTTCACATTTGCCAAAGACTAATGAGGTCATGTGAACTTTGTCCACCTAGATATGCAAATAAATCCAAGGCTTTCATGATATTTTATTTGATAATTTGGTTGAATCGTAAACCCAGGAGAAATGGCCTGCCCTCCACACACTTTATTTATGATGTCATTTCATATACTTGCTGTTGCAAGACCCACAGCCCTGCTAAGCAGAAAAAACCCAGCTTCCCAAAGCCAGGCAGAGAAGCCGTTTTTGCCATTCAGGGCATGACAGATAGCAATGAGGAAAATAGTAATGCTGGTTGTTTAGCAACAATGGGTGTGACATCCTGTAAAAATGTAATTAAGGTGGTAATAGCACAGAATGGTATGGCACTAATGGTGGAGGCTCCTGAGGAGTTTGTTTCATTGGCTGAGATGGAGGACACTTTGTTGAGGAATCTTTTTCGGGGTTATCAGAAGTGGGTGAGACCTGTCCTTCATGCCAACGACACGATTACCGTTCGCTTCGGTTTGAAGATTTCCCAGCTGGTGGATGTGGATGAAAAGAATCAACTAATGACTACAAATGTCTGGTTGTGGCAGGAGTGGACAGACTATAAGCTTCGTTGGAATCCAGAAGATTATGGTGGAATCACATCCATCAGAGTGCCCTCAGAAACTATCTGGCTACCAGACATTGTCCTTTATGAGAATGCTGATGGCCGGTTTGAAGGGTCTCTAATGACCAAAGCCATTGTAAGGTTTAATGGTACCATCATGTGGACTCCTCCTGCCAGCTATAAATCCTCCTGTACCATGGATGTGACCTTTTTCCCCTTCGACAGGCAGAACTGCTCAATGAAGTTTGGATCATGGACATACGATGGCACTATGGTGGACCTGACCCTGCTAGATGCATACGTAGACCGTAAAGACTTCTTTGACAATGGCGAATGGGAAATACTGAATGCCACAGGGCAAAGGGGCAGTCGGCGTGATGGCATTTACTCCTATCCCTACGTCACGTATTCATTCATAATGAAGCGTCTCCCTCTCTTTTACACACTCTTTCTCATCATCCCATGTCTCGGTCTGTCATTTCTCACCGTGCTGGTCTTCTACCTTCCCTCGGATGAAGGAGAAAAGCTTTCCCTCTCCACCTCCGTTCTTGTGTCTCTCACTGTGTTTCTTCTTGTCATTGAAGAGATCATCCCATCTTCCTCTAAAGTCATTCCTCTGATAGGAGAGTATCTGCTTTTTATCATGATCTTCGTCACATTCTCAATCATCGTAACTGTCTTTGTCATCAATGTCCATCACCGTTCTTCTGCCACGTACCATCCCATGGCACCGTGGGTTAAGAGTCTTTTCCTCCAGAGATTACCCAGACTGCTCTGCATGAGGGGGCACACCGATCGTTATCAGTACCCAGACATCGAGCTGCGGAGCCCAGAGCTAAAACGAGGGATGAAAAAAGGGCAACAGAAGAGTGCTGGAGGTGGACGAGGGGGGTTAAAGGAAGATGAGAACCAGGCCTGGATTGCCCTGTTGGAGAAAGCCACTCACTCAGTGCACTACATTTCCAGACACATCAAGAAGGAACACTTCATCAGAGAGGTTGTTCAGGACTGGAAATTTGTGGCTCAGGTGTTGGACCGGATCTTCCTATGGGCCTTTCTCACAGTTTCTGTGCTTGGGACCATCCTCATATTTACCCCGGCTCTGCGGATGTACCTCAGCACACCTTAAAAACCCACAAGAATTCAGCCTACCAAATCTCCTTTACCCAAAACAACATTATGACCCCTTTGAAATATATGTAGTTCCCACAACATTACAGTAATCCCTCTAAAAGTCCTTTTCTGACCTAGCCACATCTGTAATCCGCTCCAATTTCAGCTTCTCTCTATCCCTCCTAGATGCTGTGTTCAATAGTTAGACTGAAATAGCAAAACTCAGCTGAAATTAAGTTTAGGAATCTGCCCATTTAACACATAACTAAAAGGCAGCTTATAGAGTTGGAGGAGTTTGGATCTGTGTAATCTCTCTGAGGGGATCATGGATTTAAAGATCTTCAATAATTTGACTTTAATGTGACTTTTCATTTTGCTTTTAGATTTATTTATTTTAAAAATAATTTATAAAATATTTTTACGGGTTTAATGTTTCAACTGTCCATGTTTTACAGGTAAAAACCCTATTCACTCTGCTTTTTAATTTAATTCACTACCTTTGGAATAAA

Function

symbol description
chrnb3b Predicted to enable acetylcholine-gated cation-selective channel activity and transmembrane signaling receptor activity. Predicted to act upstream of or within ion transmembrane transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human CHRNB3 (cholinergic receptor nicotinic beta 3 subunit).
chrnb3a Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of membrane potential; and response to nicotine. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.
chrnb3 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to acetylcholine receptor activity. Predicted to be involved in several processes, including cholinergic synaptic transmission; regulation of synaptic vesicle exocytosis; and response to nicotine. Predicted to be located in plasma membrane. Predicted to be part of acetylcholine-gated channel complex. Predicted to be active in dopaminergic synapse and neuron projection. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04814 CHRNB3; nicotinic acetylcholine receptor beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_08395527_08423749.mRNA True 4991 mRNA 0.41 8 8395034 8426369

Neighbor

gene id symbol gene type direction distance location
CI01000300_08362799_08373727 NA coding downstream 21307 8362517 ~ 8373727 (-)
CI01000300_08323302_08335456 CHRNA8 coding downstream 59578 8323244 ~ 8335456 (-)
CI01000300_08176734_08193751 FRMPD1 coding downstream 201283 8176658 ~ 8193751 (-)
CI01000300_08161278_08172437 MELK coding downstream 222597 8160883 ~ 8172437 (-)
CI01000300_08025108_08078731 NA coding downstream 316303 8025108 ~ 8078731 (-)
CI01000300_08465867_08483159 CHRNA6 coding upstream 38885 8465254 ~ 8484478 (-)
CI01000300_08507940_08514681 CHRNB2A coding upstream 80609 8506978 ~ 8514681 (-)
CI01000300_08558046_08560329 NA coding upstream 131328 8557697 ~ 8562811 (-)
CI01000300_08590592_08591221 NA coding upstream 163126 8589495 ~ 8591388 (-)
CI01000300_08596494_08597267 NA coding upstream 170041 8596410 ~ 8597289 (-)
G413185 NA non-coding downstream 87941 8306732 ~ 8307093 (-)
G413183 NA non-coding downstream 88788 8305964 ~ 8306246 (-)
G413165 NA non-coding downstream 151937 8242650 ~ 8243097 (-)
G413143 NA non-coding downstream 238254 8156476 ~ 8156780 (-)
G413142 NA non-coding downstream 242239 8152564 ~ 8152795 (-)
G413645 NA non-coding upstream 76127 8502496 ~ 8502702 (-)
G413670 NA non-coding upstream 144030 8570399 ~ 8574103 (-)
G413666 NA non-coding upstream 280127 8706496 ~ 8709916 (-)
G413728 NA non-coding upstream 296840 8723209 ~ 8723944 (-)
G413140 NA other downstream 248145 8146532 ~ 8146889 (-)
G412681 NA other downstream 1704701 6652998 ~ 6690333 (-)
G412555 NA other downstream 2179455 6214920 ~ 6215579 (-)
G412378 NA other downstream 2633845 5711685 ~ 5761189 (-)
G411012 NA other downstream 3999913 4390320 ~ 4395121 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other upstream 543079 8958963 ~ 8973750 (-)
G414498 NA other upstream 1231680 9658049 ~ 9713722 (-)
CI01000300_10698449_10700497 NA other upstream 2269642 10696011 ~ 10701375 (-)
G414829 NA other upstream 2279631 10706000 ~ 10706323 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001207 chrnb3a coding NC_007112.7 CM002885.2 22388799 ~ 22412042 (-)