CI01000300_10698449_10700497


Basic Information

Item Value
gene id CI01000300_10698449_10700497
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10696011 ~ 10701375 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_10698449_10700497.mRNA
AGAATTAATGCAGTAGCCTATCCCTGGAATTCCCCGTCCTTTCGTACAGACACTCATAGCCTATTAAATTGAGGGAAAAAACGAGAAAAGTGTAACGTATGCAAAATGTAACATAAATGTATTTTTTATAATTGATGTGGCTCAAACATCAGATGTGTGTATAGGCGTCCCTGTACTAACAAAATAATGACATAATTAAATAGCTAGGCTACTGTGGAAATCGCAGTGTAAGCAATAGGCCTACTCTGTAGAGACCAATCCAATGCTAAATCTAGTTCATTTAAAGTAATGTGAGATGCTGAGTGCGTCATCATTATTAGGTATAATATCGCGTCTCTTTCAATATACATACTTTAAAAAATGATGTTTTCTCTTTTGTAGGCTAACCATTCTTCCCGGAGAGCATTGACTTCCAAAATTCCACCAGTATCTGATTTCTTTGAATGTGTTTTTATAATTACGATTGTGGACACCGACAAAGAAAACCCGTTCTCACGATTGTTCTTTTTAAATGTCTTTAATACCCGTTTTTAAAACATTAACAGACTCTTCGTACTGCTAGCTGATTCGTGTCGTAGCCGCAAGTCTTCCTGGATCAGCTGTTTGAGTGCGCATGCGCAGTACATACAGTACTGCAGCACGGTTTGCTGTGACGTTCATAAGAGGCAAGTCCGAACAAATATCTCCCTACGTGTAATAAATATTAGGCGCATCAACTTATAAAGGAGCTGATTCAACTCATTTATGCAGCGCAGGGGAACATGTTATGCCTGGTGACAGAGAAAATTGAAATGCAGCGTGAACTGTGATTATTTTCGCATCTTATCCTTATTGTTTTTACCTGACCTGTCAAAGTGAAACTCTTCAGTGGACGGATGATGAAGAGGATGCATGCCGAGGATGAACTGACCAAAGCAGCCGCCACTGGGGACACTTGCCGTGTTCAGCTTTTACTTTCTAACGGAGCGAATGTCAACAGCGTTAACAGATTCGGAAGAACCCCTATACAGGTGATGATGATGGGTAACACACCATTGGCTTACCTGCTGCTGAAATATGGAGCGGATCCTAATCTGCCTGATCCCGGGACAGGAAGCACTCCTCTGCACGATGCTGCCAGAACCGGATTCATGGACACTGTGCAGCTTTTAATGCGCTTTAATGCTGATCCCAATGCAACAGATCACAACAATTTGCGACCTGTGGATGTGGCACGGCAGACTGACCATGTGGACGTGGTTGAATTTCTTAGTCGTTTTTAAACACTAAAGTTTTTTTTCTTTCTTAAATATATCACAAATGGCAGGCCTATTTAGCCTATTTTAAAAAGTAAACGAAGGAGCGCAGTTAGTTAATGCACTTTGTGTAATGTATTAATTTTTTTCTGTGGATGTATAGCCTATTTGGAGTTTAAACAAGATTAAAACAAGTAGGCTATATTATATGTTTCCTTTGAGAATTTTTTGTTCTTCATTTTTTTTTTCATTTTTGAATAGGCTAGCCTACATAGCAGCATCTACGCATTATGTTTGCTAAAAACTACGGAAAGAAACCCAAACTTTAGTCTGAAACATTAACGACATAGCCTACTAAAACGTGTAGTAGACAAGGCGTAATGTTACAAATTATTTACTATATCCAAAATATTTGTTCTTAATTTAGGCATGGTGTATGATGTGGCTAAATTGAGTCAAATCGATGAAATATAACGAAATCAAGTCGTCCGTTTTGTGAGTAAGCTAGCCTATGCTCACAATGCAATAATAGCATGAGATTTATGTACATTTTGGAGAGCCATTTTCTCAGCTCTCTCTCTTTCTCTCTTTTTTTTTTTTTTTTTTTTTTGTAAAGATAGTTTCGTTAGAACTATGTTGTTTTATGAATTAGCTTGAATAAA
>TU476415
TTTATGCAGCGCAGGGGAACATGTTATGCCTGGTGACAGAGAAAATTGAAATGCAGCGTGAACTGTGATTATTTTCGCATCTTATCCTTATTGTTTTTACCTGACCTGTCAAAGTGAAACTCTTCAGTGGACGGATGATGAAGAGGATGCATGCCGAGGATGAACTGACCAAAGCAGCCGCCACTGGGGACACTTGCCGTGTTCAGCTTTTACTTTCTAACGGAGCGAATGTCAACAGCGTTAACAGATTCGGAAGAACCCCTATACAGGTGATGATGATGGGTAACACACCATTGGCTTACCTGCTGCTGAAATATGGAGCGGATCCTAATCTGCCTGATCCCGGGACAGGAAGCACTCCTCTGCACGATGCTGCCAGAACCGGATTCATGGACACTGTGCAGCTTTTAATGCGCTTTAATGCTGATCCCAATGCAACAGATCACAACAATTTGCGACCTGTGGATGTGGCACGGCAGACTGACCATGTGGACGTGGTTGAATTTCTTAGTCGTTTTTAAACACTAAAGTTTTTTTTCTTTCTTAAATATATCACAAATGGCAGGCCTATTTAGCCTATTTTAAAAAGTAAACGAAGGAGCGCAGTTAGTTAATGCACTTTGTGTAATGTATTAATTTTTTTCTGTGGATGTATAGCCTATTTGGAGTTTAAACAAGATTAAAACAAGTAGGCTATATTATATGTTTCCTTTGAGAATTTTTTGTTCTTCATTTTTTTTTTCATTTTTGAATAGGCTAGCCTACATAGCAGCATCTACGCATTATGTTTGCTAAAAACTACGGAAAGAAACCCAAACTTTAGTCTGAAACATTAACGACATAGCCTACTAAAACGTGTAGTAGACAAGGCGTAATGTTACAAATTATTTACTATATCCAAAATATTTGTTCTTAATTTAGGCATGGTGTATGATGTGGCTAAATTGAGTCAAATCGATGAAATATAACGAAATCAAGTCGTCCGTTTTGTGAGTAAGCTAGCCTATGCTCACAATGCAATAATAGCATGAGATTTATGTACATTTTGGAGAGCCATTTTCTCAGCTCTCTCTCTTTCTCTCTTTTTTTTTTTTTTTTTTTTTTGTAAAGATAGTTTCGTTAGAACTATGTTGTTTTATGAATTAGCTTGAATAAAACCATATAGTTTTACTCCACCATGCAAGCTTAAATTATGTATTTGTTCTTTATGAAGGAGAAACTGTTTCACTGGGTTTTATAGAGTACTGCCCCACCAATTATAGAATTCAAAGAACCATTTAGCTTATGTGGAAAGGAATGTCTGATTATTTATATACTTTTGATTGCAGACATTATTGATTAGCCATATATAATTTTACCTCTTGGCTGCTGCAAATAACCTGTGTGAAATACACATACTGGTATTATGTAAGAGTTAGACAAATAAATGTTGAGAACTAAATAATAAATAAATAAATAAATAAATAAATAAATAACCTATATAAAAATTTAATTATTTAAAGCTTGATTTTGCATGAAGACAATTTACTTTCAAAGTGCCAAAATGTCTGGTTATTTGTAGAATTACCTATTAACTTGGAGTTTATCTCATATGAAATTGTGTAAAATTATTTCTGCAATGTATTATTCAGAATACAATAAGAGGACAGTTTGGTTGGCAACATGTATAGCTGATCTAATCTAAAGAAAAGAACAGGAAAAACAGAATTAGGTCAGAAACTATTGTAGATCAAAGTCAGATTAAAAAGGCCTCCATTATGAAAGCAGAAATATTATTTTGAAAACTATGCATTTTACCATTTTTTGTTACAAATTGGAATCTTTTCTTCTCAAAACTCTGGAAAAACAAATGTGCTGCTGACTCTAAATGGAGAAGTTTTTAGCATTGCTCATTGAAATGTGGCAATATGAATAATATAATAATAGAAATTGCATAGGGAAAAAACAAAAAACAAATTGTGGTTATGAGAGAAATGCAGATAGCTTTATATATAACCAAAAACACTACATTTACTACATTTAAAAGGCACTGAAAAAAAAAATTGATAATCAAAAGATCCTGTTCATTCCCTCTACCAATGCTTCCATGCATTATGTCCAACTTTTTTTCTTTTTAAACAAATACTGTATTTTGAAGAACTGCACGTTCATATCACTGGCTGACAAACAAACCCCTTTTCTTTTTTTATTTAGGTTAATATAGCGGTAAGAATGTCACATGTTTACAGATACATGATTGCAGTTGTGGACAACACATCTTCATGGCTCCTTGATGGCAGAGTACTTTAATGTTTGGGCAACATTACTGAAGACTGAGACATCAACTGGACAACAAAAGAAAACAAAAATTATGACATGGAAAGTTTTAACTCAGTATGCATATAATGTTTAGAAAAAATATCTCATCATATAATTACATATATTAAAATAAAAAAATAGCCATTTACTTAGTTTTAAGAGCTTTAAACTCACTTTTTGTGCACTTATTGTGCTCCCCCAGTCCATCTGGCTGATCTGTGGGATTGCTGTGAGCAGGATGCTGCTTGCTTTATTTGCGTTCTCTTTCATGGTTTTCAGAACATTGTCCACACACACCTAGAATAAAAAAGGAGCTAAGTTTGGTATATGCAGGTTTATAAAAAAAATTATAGGAAAAATACAAATAATGGTACAATAATGGTAATGAATGGACCAGCAAGCCAGAGATCATAAACTAATAAGATATAAAGAAGCAATGCATTATGATCTTAAAATGATTACATTTATTACTAAAACTGCATGTTACCTATACAAACAAATGTAAAAAAAAATAAATAAATAAAAAACCCACATAGATTTCAGGCTGTTAAGTCTCACATTTGCCTGTGGCCACTCAAGATAATGCAGATAAGGTTGCCATGAGTCATGTATAACCTGTCACAAGTTAAAACTGAAACTGGAAGACATTTTATGCTCAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_10698449_10700497.mRNA False 1897 mRNA 0.38 2 10697814 10701375
TU476415 True 2959 TUCP 0.33 2 10696011 10700634

Neighbor

gene id symbol gene type direction distance location
CI01000300_10619074_10633587 NA coding downstream 64227 10618864 ~ 10633587 (-)
CI01000300_10614813_10616496 NA coding downstream 81318 10614808 ~ 10616496 (-)
CI01000300_10599691_10601222 NA coding downstream 96592 10599209 ~ 10601222 (-)
CI01000300_10591932_10594068 NA coding downstream 103746 10590384 ~ 10594068 (-)
CI01000300_10550389_10552830 NA coding downstream 142570 10550051 ~ 10555244 (-)
CI01000300_10747469_10749727 NA coding upstream 44137 10745512 ~ 10749964 (-)
CI01000300_10750564_10751519 NA coding upstream 49170 10750545 ~ 10751519 (-)
CI01000300_10846414_10847534 CXXC4.S, CXXC4 coding upstream 144308 10845683 ~ 10848670 (-)
CI01000300_10911371_10914529 NA coding upstream 209533 10910908 ~ 10914529 (-)
CI01000300_10949572_10953122 NA coding upstream 248110 10949485 ~ 10953122 (-)
G414802 NA non-coding downstream 8075 10686386 ~ 10689739 (-)
G414825 NA non-coding downstream 16805 10680443 ~ 10681009 (-)
G414794 NA non-coding downstream 17620 10675202 ~ 10680194 (-)
G414782 NA non-coding downstream 153858 10542265 ~ 10543956 (-)
G414766 NA non-coding downstream 198743 10496113 ~ 10499071 (-)
G414826 NA non-coding upstream 2014 10703389 ~ 10703637 (-)
G414829 NA non-coding upstream 4625 10706000 ~ 10706323 (-)
G414838 NA non-coding upstream 32234 10733609 ~ 10738708 (-)
G414841 NA non-coding upstream 39129 10740504 ~ 10740720 (-)
G414861 NA non-coding upstream 58799 10760174 ~ 10760508 (-)
G414498 NA other downstream 1037009 9658049 ~ 9713722 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other downstream 1721814 8958963 ~ 8973750 (-)
G413140 NA other downstream 2550925 8146532 ~ 8146889 (-)
G412681 NA other downstream 4007481 6652998 ~ 6690333 (-)
G412555 NA other downstream 4482235 6214920 ~ 6215579 (-)

Expression


Co-expression Network