XLOC_012466


Basic Information

Item Value
gene id XLOC_012466
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 53364010 ~ 53366072 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024559
ATGGAAATGAGAGCATTTCTCCtcctccattggcagattattctgTCTGCTTTAAGGAGAACTGATGAAGGAATGTCTGGAGATTTGAGGACTCTCACCAAGAGCAGCACTGCAGTTAAAGCAGATCAACTCAAAGTACTGCGAAAACCCGTCACCATAGAGACGCCACCACTGATGAGTCGACCGCTGGAGAGCActagagcagGATCGAGAGGCAGGTCTGGGTCTGCTGTTGATGGCCTGGATCTGCTGCTGGTGCTGCTGTCTCAGGATCTCCATCTTCTCGTTGTTCCTCCGCTCCTGcgcctccatcatttgggccagcTCCTGGTTTCTGCGGTCCTCCAGCTCCCTGTTCCTGCTCTGCAGCTGCTGGATCTCCTTGCCCATGCGCTGCGCCTGCTCCTGGAAGCCCTGCTCCAGCAGATGCGCCTGCTCCTTCAGCTTGCAGTCCATCGCGCGCTGCATGTGTGTCTGCTGCAGGCTGAGCTCTGTCTGCATCTGCTGCAGCATCTGCTGGATCTGCTCTTCATTGTTGCGCTGCTGAGTCTCCATCTGCTGCTCCAGCTGCAGCCGCGTCTGCTCCTGCACCTCCACCTGCTGCTCCAGGAGAACCGCCCGCTCACGCTCCTCTGCcgatgcacacacacgcacataggcacacacacacgcgcgcacacaaaTTATTACAGATGGAGAAGAGTGTACTCTATCAGATTAAGCTGACACAGGCGCAGCTCTTTGCATGAAGTCGgcactttgacttgtatttcagtgcagacaacacaacaaacattaCTGATGTGTTCCTCGTCATTATTATTGcacacatattccaattttggttcttggcTTTTGGTTCAGTCCCTAAATGTCTGTTCTGTGTTGTGCAAAGGAACAGCAACACTACTCAGTGGGAAACGCTTCACAGTTTggtttttggaatgtgttgcagccaaaactgtttaattaaaaaagacaataaaatgatGAGGAGCACATTAATAGTGTTTGTtgtgttgtctgcaatgaaacaGGAGTCAAAGTACACTTGAAattcactactttatttttaattagcgtTTTCCACACAGTCACAGCTCTAT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0032502 developmental process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024559 True 1106 lncRNA 0.50 2 53364010 53366072

Neighbor

gene id symbol gene type direction distance location
XLOC_012465 unm_sa911 coding downstream 4982 53349626 ~ 53359028 (-)
XLOC_012464 CABZ01066926.1 coding downstream 15524 53344385 ~ 53348486 (-)
XLOC_012463 exd1 coding downstream 34306 53324006 ~ 53329704 (-)
XLOC_012462 si:ch1073-416d2.4 coding downstream 55165 53304723 ~ 53308845 (-)
XLOC_012461 GABRR1 coding downstream 81471 53273684 ~ 53282539 (-)
XLOC_012467 CABZ01117357.1 coding upstream 22167 53388239 ~ 53393653 (-)
XLOC_012468 mycbp coding upstream 72723 53438795 ~ 53440284 (-)
XLOC_012460 NA non-coding downstream 264246 53099339 ~ 53099764 (-)
XLOC_012458 NA non-coding downstream 542156 52809270 ~ 52821854 (-)
XLOC_012455 AL935141.1 non-coding downstream 744420 52619473 ~ 52619590 (-)
XLOC_012449 NA non-coding downstream 876317 52464598 ~ 52487693 (-)
XLOC_012448 NA non-coding downstream 1242952 52119574 ~ 52121058 (-)

Expression


Co-expression Network