XLOC_012449


Basic Information

Item Value
gene id XLOC_012449
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 52464598 ~ 52487693 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025029
cacacacatatatacacataatttaattataaattatgtaataattaagtaaatatatatatttaattatccCCGTCACGTCGTACTCATGGTTCCGTCTCATATCAGAACACCCGTGTGTAAGCTACGTGACAGCTAAGTTTCATGCTCACTTTTCCCTCAAGGCAGCCAGCGGCAGGACAGCTCAACGCGATTTTGgACAGAATACAAACACCATACACGTTTGGAAGAACACAAGGTGGTGTGTGTTTGCAGGTATATCAGAGCGTTTCTCTGCAGTTTCTCAGGTGCTCAGGTGTTCGAGTCGGCGCAGTGATTGGCGTTTCCGCAGCGCTGGGATCTGACACGTGTGCCGGACGGGCGCTGGACGCTCCTCCGCGCTTTGCATATTCACAGCTCTGTCGACTTCTCGGCAGGCCACTTCATAATTAACAGCTGTTGAGATGTCAAACGCGACTCCGGCCGAGGCACATGCAAATATGTTTGTATTCCTACCCTGCGCCTCTGCGTTTCCTGGGGTCACGATCTCTGTCCCTCTTTCAGTctgccatacacacacacacacacacacacactgatggacACGCACTTGTAAACCGAGCTCTTCCCTGGCGCTGTCAGGTCTCGAGGCTCACGCTCCAGTCGACAACTTCTGCATAAAGTCATGGCGTTTGAACAGGGGGGAGTATTAAAATGAGCCCTGCtgcgttctctctctctctctctctctgtgtgtgtgtgtgtgtatttgtcatgcTTGTTTAGCCAAAGTTGAAATGTAAATATGGACGGTGAAAAGATCTGGCCGGCGATATGCTGCTTGAAATTCTAATAAACAGGTAGCTGTCCTCTTGTTATAAATGATACCCATAAAAAGCAGGGTGATTCCTTTAACTGATAAAGACCAG
>TCONS_00025031
gtacatttttacagtCTGTGATTGAAATACTAAAAGTGCATTTGAAAAGAAGGGCAAGTGATTTAACTATTGGCATTATGCTATCGCAAGcatgaacacattaaataaataaataaccgttAATTTCGTCTCACGCGCATGCGCAGTTCGCGCACGCACCTGCTTGCTGTTTTGGTAGTCAACTGAATTTAAAGCCAAACTGACAGAGCGTTTGTTGTGAATGACTGAACTGAAGCGgACAGAATACAAACACCATACACGTTTGGAAGAACACAAGGGTATATCAGAGCGTTTCTCTGCAGTTTCTCAGGTGCTCAGGTGTTCGAGTCGGCGCAGTGATTGGCGTTTCCGCAGCGCTGGGATCTGACACGTGTGCCGGACGGGCGCTGGACGCTCCTCCGCGCTTTGCATATTCACAGCTCTGTCGACTTCTCGGCAGGCCACTTCATAATTAACAGCTGTTGAGATGTCAAACGCGACTCCGGCCGAGGCACATGCAAATATGTTTGTATTCCTACCCTGCGCCTCTGCGTTTCCTGGGGTCACGATCTCTGTCCCTCTTTCAGTctgccatacacacacacacacacacacacactgatggacACGCACTTGTAAACCGAGCTCTTCCCTGGCGCTGTCAGGTCTCGAGGCTCACGCTCCAGTCGACAACTTCTGCATAAAGTCATGGCGTTTGAACAGGGGGGAGTATTAAAATGAGCCCTGCtgcgttctctctctctctctctctctgtgtgtgtgtgtgtgtatttgtcatgcTTGTTTAGCCAAAGTTGAAATGTAAATATGGACGGTGAAAAGATCTGGCCGGCGATATGCTGCTTGAAATTCTAATAAACAGGTAGCTGTCCTCTTGTTATAAATGATACCCATAAAAAGCAGGGTGATTCCTTTAACTGATAAAGACCAG
>TCONS_00025030
gtacatttttacagtCTGTGATTGAAATACTAAAAGTGCATTTGAAAAGAAGGGCAAGTGATTTAACTATTGGCATTATGCTATCGCAAGcatgaacacattaaataaataaataaccgttAATTTCGTCTCACGCGCATGCGCAGTTCGCGCACGCACCTGCTTGCTGTTTTGGTAGTCAACTGAATTTAAAGCCAAACTGACAGAGCGTTTGTTGTGAATGACTGAACTGAAGCGGTtatgtaaaacacacacatatatacacataatttaattataaattatgtaataattaagtaaatatatatatttaattatccCCGTCACGTCGTACTCATGGTTCCGTCTCATATCAGAACACCCGTGTGTAAGCTACGTGACAGCTAAGTTTCATGCTCACTTTTCCCTCAAGGCAGCCAGCGGCAGGACAGCTCAACGCGATTTTGgACAGAATACAAACACCATACACGTTTGGAAGAACACAAGGGTATATCAGAGCGTTTCTCTGCAGTTTCTCAGGTGCTCAGGTGTTCGAGTCGGCGCAGTGATTGGCGTTTCCGCAGCGCTGGGATCTGACACGTGTGCCGGACGGGCGCTGGACGCTCCTCCGCGCTTTGCATATTCACAGCTCTGTCGACTTCTCGGCAGGCCACTTCATAATTAACAGCTGTTGAGATGTCAAACGCGACTCCGGCCGAGGCACATGCAAATATGTTTGTATTCCTACCCTGCGCCTCTGCGTTTCCTGGGGTCACGATCTCTGTCCCTCTTTCAGTctgccatacacacacacacacacacacacactgatggacACGCACTTGTAAACCGAGCTCTTCCCTGGCGCTGTCAGGTCTCGAGGCTCACGCTCCAGTCGACAACTTCTGCATAAAGTCATGGCGTTTGAACAGGGGGGAGTATTAAAATGAGCCCTGCtgcgttctctctctctctctctctctgtgtgtgtgtgtgtgtatttgtcatgcTTGTTTAGCCAAAGTTGAAATGTAAATATGGACGGTGAAAAGATCTGGCCGGCGATATGCTGCTTGAAATTCTAATAAACAGGTAGCTGTCCTCTTGTTATAAATGATACCCATAAAAAGCAGGGTGATTCCTTTAACTGATAAAGACCAG
>TCONS_00025032
GACACACTACATAGAGACAGAAGAGCGCCATCATGTGGACAACACATGTGTAAACAGGAAACAGCAGCAGTTCTGTTTATTAATGTAACCTACGCACAAAACAACCTGACAGGAGAATGTGCGCAGCTGAAGTCATCCGGATCCGCCTGACTTCTGCCTGCCCTTCAGACAGACACTCCTCGCTCCTCGCGGTTTTGTGTGATCACCGGCCTGACATTAAAGAGATGCTGCAAGAAAAGAAATGGGCTTATCTGGATGCGGGGCTGTAAGGGGAGATGATGTCCTCCGGGCCCTGGACAAGGAGGTAACAGTCTGTCATGGACGAGGAGCCAGCCGAGTGTGTAACGACACGGGAACGAGACGCTGGCCACACATTCACATCACGGCGGAGGGGGAAATCTTCCTCTGGCCTGCTGGCGgACAGAATACAAACACCATACACGTTTGGAAGAACACAAGGGTATATCAGAGCGTTTCTCTGCAGTTTCTCAGGTGCTCAGGTGTTCGAGTCGGCGCAGTGATTGGCGTTTCCGCAGCGCTGGGATCTGACACGTGTGCCGGACGGGCGCTGGACGCTCCTCCGCGCTTTGCATATTCACAGCTCTGTCGACTTCTCGGCAGGCCACTTCATAATTAACAGCTGTTGAGATGTCAAACGCGACTCCGGCCGAGGCACATGCAAATATGTTTGTATTCCTACCCTGCGCCTCTGCGTTTCCTGGGGTCACGATCTCTGTCCCTCTTTCAGTctgccatacacacacacacacacacacacactgatggacACGCACTTGTAAACCGAGCTCTTCCCTGGCGCTGTCAGGTCTCGAGGCTCACGCTCCAGTCGACAACTTCTGCATAAAGTCATGGCGTTTGAACAGGGGGGAGTATTAAAATGAGCCCTGCtgcgttctctctctctctctctctctgtgtgtgtgtgtgtgtatttgtcatgcTTGTTTAGCCAAAGTTGAAATGTAAATATGGACGGTGAAAAGATCTGGCCGGCGATATGCTGCTTGAAATTCTAATAAACAGGTAGCTGTCCTCTTGTTATAAATGATACCCATAAAAAGCAGGGTGATTCCTTTAACTGATAAAGACCAG
>TCONS_00024415
GGAATAATATGAGGGCTGTAAATAAAAGAAAGCAGGTTGTTGGATGGAAATAGCACAGAACGTTTCATGCGCAGCAATTTGTGAGTGAAAGTCGTTTCAAAGTAAATCATACGGCATTATTTCTTTGACTGAAAGCGTATGAGCTTTATGATCAGAAACCAAGGTCAGAGAGCTGATAGTATTCTGCTGCTGTTTCAGGCAAATGGCTCTGAATGCAAAGCGTTTGTATGACAGTCTGAGCCAAACTAGGCAGATATTAAAACCAATGACTTCACTGGACTACACAAATCAGagaagagatgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtagaggttATAAGATAAAGGGGGAACAGTACACAGATCTGACCGGATCTGACACACTACATAGAGACAGAAGAGCGCCATCATGTGGACAACACATGTGTAAACAGGAAACAGCAGCAGTTCTGTTTATTAATGTAACCTACGCACAAAACAACCTGACAGGAGAATGTGCGCAGCTGAAGTCATCCGGATCCGCCTGACTTCTGCCTGCCCTTCAGACAGACACTCCTCGCTCCTCGCGGTTTTGTGTGATCACCGGTAaatctttattaattttaattggaGCCTCCATTTAAAAGAGCAATTAAAGCGGATTAATCGAGCCCATCCCGTATAATGTCTTCTGTTAATTAGTTTGTCAGCACTGTTTTAATATCGCCTAATGACTTCATATTTCAGGCCTGACATTAAAGAGATGCTGCAAGAAAAGAAATGGGCTTATCTGGATGCGGGGCTGTAAGGGGAGATGATGTCCTCCGGGCCCTGGACAAGGTCAGGGACCGCGAAGGGCCACAGGGACACGCTGGAGAGCAcgGAGGTAACAGTCTGTCATGGACGAGGAGCCAGCCGAGTGTGTAACGACACGGGAACGAGACGCTGGCCACACATTCACATCACGGCGGAGGGGGAAATCTTCCTCTGGCCTGCTGGCGGTGTGTTTTACAACATGTGTAAAGTCTTCACCAGCTTGCAAGACAGGAGATGTTTCTTCAGGGATCACGGAAAAGCTGGAAAACACACCAGTTCTAAAGGCAGAACGAAAAGACTGTTTGATGATGACGACATTAAGGGAGAGTTCACCCTCAACTCAAATTTCTATATTCTACAGTGTAAAAAtgattgactttacttaaaa
>TCONS_00024414
GGAATAATATGAGGGCTGTAAATAAAAGAAAGCAGGTTGTTGGATGGAAATAGCACAGAACGTTTCATGCGCAGCAATTTGTGAGTGAAAGTCGTTTCAAAGTAAATCATACGGCATTATTTCTTTGACTGAAAGCGTATGAGCTTTATGATCAGAAACCAAGGTCAGAGAGCTGATAGTATTCTGCTGCTGTTTCAGGCAAATGGCTCTGAATGCAAAGCGTTTGTATGACAGTCTGAGCCAAACTAGGCAGATATTAAAACCAATGACTTCACTGGACTACACAAATCAGagaagagatgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtagaggttATAAGATAAAGGGGGAACAGTACACAGATCTGACCGGATCTGACACACTACATAGAGACAGAAGAGCGCCATCATGTGGACAACACATGTGTAAACAGGAAACAGCAGCAGTTCTGTTTATTAATGTAACCTACGCACAAAACAACCTGACAGGAGAATGTGCGCAGCTGAAGTCATCCGGATCCGCCTGACTTCTGCCTGCCCTTCAGACAGACACTCCTCGCTCCTCGCGGTTTTGTGTGATCACCGGCCTGACATTAAAGAGATGCTGCAAGAAAAGAAATGGGCTTATCTGGATGCGGGGCTGTAAGGGGAGATGATGTCCTCCGGGCCCTGGACAAGGTCAGGGACCGCGAAGGGCCACAGGGACACGCTGGAGAGCAcgGAGGTAACAGTCTGTCATGGACGAGGAGCCAGCCGAGTGTGTAACGACACGGGAACGAGACGCTGGCCACACATTCACATCACGGCGGAGGGGGAAATCTTCCTCTGGCCTGCTGGCGGTGTGTTTTACAACATGTGTAAAGTCTTCACCAGCTTGCAAGACAGGAGATGTTTCTTCAGGGATCACGGAAAAGCTGGAAAACACACCAGTTCTAAAGGCAGAACGAAAAGACTGTTTGATGATGACGACATTAAGGGAGAGTTCACCCTCAACTCAAATTTCTATATTCTACAGTGTAAAAAtgattgactttacttaaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117455

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025029 False 908 lncRNA 0.47 3 52464598 52474026
TCONS_00025031 False 931 lncRNA 0.47 3 52464598 52474274
TCONS_00025030 False 1140 lncRNA 0.45 3 52464598 52474274
TCONS_00025032 False 1113 lncRNA 0.51 6 52464598 52487300
TCONS_00024415 False 1199 lncRNA 0.45 3 52476873 52487693
TCONS_00024414 True 1058 lncRNA 0.47 4 52476873 52487693

Neighbor

gene id symbol gene type direction distance location
XLOC_012448 NA coding downstream 343540 52119574 ~ 52121058 (-)
XLOC_012447 NA coding downstream 372599 52059009 ~ 52091999 (-)
XLOC_012446 ERG28 coding downstream 525935 51934501 ~ 51938663 (-)
XLOC_012445 numb coding downstream 571475 51821906 ~ 51893123 (-)
XLOC_012444 exd2 coding downstream 645923 51796668 ~ 51818675 (-)
XLOC_012450 prox2 coding upstream 5806 52493499 ~ 52521002 (-)
XLOC_012451 rps6kl1 coding upstream 72259 52559952 ~ 52579709 (-)
XLOC_012452 si:ch211-173a9.6 coding upstream 93319 52581012 ~ 52587598 (-)
XLOC_012453 si:ch211-173a9.6 coding upstream 102220 52589913 ~ 52595932 (-)
XLOC_012454 lrrc74a coding upstream 112813 52600506 ~ 52609728 (-)
XLOC_012443 NA non-coding downstream 673774 51788712 ~ 51790824 (-)
XLOC_012440 NA non-coding downstream 846235 51576066 ~ 51618363 (-)
XLOC_012434 NA non-coding downstream 1445777 51015111 ~ 51018821 (-)
XLOC_012455 AL935141.1 non-coding upstream 131780 52619473 ~ 52619590 (-)
XLOC_012458 NA non-coding upstream 321577 52809270 ~ 52821854 (-)
XLOC_012460 NA non-coding upstream 611646 53099339 ~ 53099764 (-)
XLOC_012466 NA non-coding upstream 876317 53364010 ~ 53366072 (-)
XLOC_012467 CABZ01117357.1 non-coding upstream 900546 53388239 ~ 53393653 (-)

Expression


Co-expression Network