XLOC_012434


Basic Information

Item Value
gene id XLOC_012434
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51015111 ~ 51018821 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024557
gtTATGAAGGCCATTTTgctttagtttaacttttttttccagttaatgttttggtaacactttagttgaagtaccaattctcactattaactagtgtcTAATtccctgcctattattaagatgttAACTGTTTATCAGTACAGTATAAACTACTTCCTAAactactacattaataaatgttaataatagaCAGCAAATGAGGAGTTCATTGTGGCAGAAGTCatatttaatggtttattaatagcgagaattgtacctgaaaataaagtgaccaatGTTTATAATTTGCTGTGATCATTTTTTGAATggttttactctttacttttgtACTTTAACAGCAGCAGCAACAATATTTagccatttttgttgttgttttcagctAGTTATGAAGGCCATTTTGCTTTAGCGTATAATTTTTTCCAGTTaatgttttggtaacactttagttgaaATACcatttctcactattaactagtgtcTAATTCCCTGCCTATTAATAAGATGTTGGCTGTTTAGTAGCACATACAATATAAAGCACATATTCGGCAAGAACTCACTCTACATCCCTAAACTTAGCCAACCACTACatcaataactattaataatgaaGTTGATATTGGCAGAAGTcatagtgagaattgtaccttcAAATAAAGTGACCAATGTTTTGCCATTTGATTTGCTGTGATGATTTGTTCTCAGTCATCTGTCCTGTAAGTGGTGAGCTTGTGCCTGTGTGTGGGTCATGTGaattggctgtgtgtgtgtctcctccaCTCTGTGATTTACAGCAGGACTGTGAGCGTCTTCATCAGGAGCTCCAGCAAACATTAACAGACACGAGCAGAGGAAACCGCAACACACTCGCTGTGATCATGTCGTGTGGCTCGTGTATCTGGGCTGTGATCTGGCTGCTGGTTCTACTGATTCTCGGCTGGCCCCTGAGCATCATGCTGGGGGGTCTGTACGGCCTCATCGCCCCGCTCACCGTCTGCTTGGGTCTGGACCGGCTGGCTGACCTGCTGATGGAGGGAGCAAACCTGGGCCGAAAGTGCGCTCTGAACATGAGACACGGGAAACCCCTGTGCTGAAAACACCTCAAGAAGACCTGCTGGAGTCTGAGCTGCCCAGATCTCTGTGTTTTTGACGTCATCTACAATGTGTGCTTGATTTCTTTGAGACTGCGACATGATGCTTCTGTACAACCTCGGTGATCTTTTCTTGCTTTCATTCTCTGTAGCTTATGCTCTCAGCACTGTTAAATATTCAAATTTATAGACTCTTTCAGTATTTTGGTGCTGATGTTGGTCTTGAAAATGACTGTCCTTGAAGATTTCCCTCAGATCTTCACTCATGGCTTTTCTACCTTAGCTAGGCCTGTAGCCAAATGATtctcattagctatgttttcattcaaagatgcaaattaaatgtatgcgcaaaactgTATTATGCATGAAAGATGttcgaataaagcagcgtttccatccaacgagtcaaagaaaacaatcgtcactttctgattaactggtggcaaatatcaacagtaaaaactgagtttactgcggtagaagaagctgcgtcagtcttttccttatttaatgaATGACTTTCACCTCAAAAGACGATATGCCAATGAACACGtggagacgcagagcacagacgcttttgattctggaggtctttaataatataataacactaatactagggatgtaacagaatcagaatttcacggttcgataataccttggtatgaatgacacggtacggtatttattg
>TCONS_00025025
TTGCTTTAGCGTATAATTTTTTCCAGTTaatgttttggtaacactttagttgaaATACcatttctcactattaactagtgtcTAATTCCCTGCCTATTAATAAGATGTTGGCTGTTTAGTAGCACATACAATATAAAGCACATATTCGGCAAGAACTCACTCTACATCCCTAAACTTAGCCAACCACTACatcaataactattaataatgaaGTTGATATTGGCAGAAGTcatagtgagaattgtaccttcAAATAAAGTGACCAATGTTTTGCCATTTGATTTGCTGTGATGATTTGTTCTCAGTCATCTGTCCTGTAAGTGGTGAGCTTGTGCCTGTGTGTGGGTCATGTGaattggctgtgtgtgtgtctcctccaCTCTGTGATTTACAGCAGGACTGTGAGCGTCTTCATCAGGAGCTCCAGCAAACATTAACAGACACGAGCAGAGGAAACCGCAACACACTCGCTGtaagtttgctttcattttctgAACTTCACAACTTTAACAGGATGAACTGAATATAATTGACAAGCCAAGACAGTGTTTATTCTCCATCCACTTGTAGAGTGTTAGCTGTAAATGCTCTTAGGAAAGGATCATTTAAGAAAGGGATCCCTCAAGAGCAGATCATGAGACCGACCGTAATTTCCTCAAAACAGCAGCTGGTTTTACTGTAAGCACTGTGTTAAACCACAGCCGCATCACATGACTTCTGTTATGTCAAATGCACAGAGAACTCAAGCTGGCTTATGATAATGTAAAGATGTGTTTGGATTTGTTTACATCAGTTCAGGATGTAAAAGTTTTTCAAGTTATGAAAGCTTTAACTTTAACTAGCTTTAACTAgctaaactacctgacaaaagtcttgtcacctatccaagttttaagaacaacagaTACTAACTTGatttatagttgatcatttggtttatattgattattaatgatttgattaggacagtaagatctgactctgctcagactaaagtctcatcactgaacagaaataatgtccagtatagaatataaagtcctgctgcagtggagacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgacatgactcaaaccactgattaataaagtcatctggaatgaagaagaaagcgttcagcaggactcccagagctcatcaagactctttgtgttcatcttcatctcctccttcttcatcttacctcagacatgctcaataatgttcatctctggtgactgggctgggcaatcctggagcagcttgaccttctttgctttcaggagttttgatgtggaggctgaagtatgagaaggagcactatcctgctggagaattgttcctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgatacctcaggctgttgatgttgatcatccactctgcagatctctcttcTTGGCTTGGCTCTTCTTGGATtattggctccatgctggttccagtaggtcttctgtagtattggtgatgattggcatggagttcaacagatgattcagcagaaaaatccaccttctgacacttttcacTATCAACTTGAAGtgaagatattatttgttgcttttacaactggaatCAACTACAAGGCTTCTGTcagatagtgtatatatatataaagcttttttagcttttatatatataaaaaatataatattatacatggatttaaaaagttaaataataataatatagtaatgcatttaaaaaaaaaaaaacaatacaaagaaAACCAAGTTGTATAAACGTAGTAACCCTaacattaaaacagaaattaaaggaaaaaaatttaagtaaataaagaaaCGAATGGAGGAATTTAGCAATCAAAGCAATCGTAGTTTAGATTCGATTATCATAATATGTTCATTGTTACAATGAAAGAGTTGATGAAGCCGTTGAGAAAATCCACAGAAGTTTGCCATACAGGTTGGAATTGGTGTTGAAATATTGGTTCTGATTAGCTTAATCCTCTTCAGTTAAAATGACTTGAAACGTGGAATGTCTGAGGATTTCCAATGTATTAGCATCCCGTCAAAAGAGAATGTTGCtgggattttgtaaatgtgtataaTGCCTCAAGATATCTGAGAATTGTAGCAAACAAAATCTGGTTTAacctttttttgaaaaatatttaattatatcagTTCACAAATGAAACTGTTTTTGTGATTTGGGGTTTTATGTATTAGACACTTCTTTTCCAATACAAGAAATTGTTAACCCTCCCCCAGTGAGCgctttttaaataagttgtttgaacaagcagcaacttTTTTGGTGCATGACGAAGTCAAAAAGCTGTTGTTTACGATAAATGTTTGTGCTCCTGCAGGTGATCATGTCGTGTGGCTCGTGTATCTGGGCTGTGATCTGGCTGCTGGTTCTACTGATTCTCGGCTGGCCCCTGAGCATCATGCTGGGGGGTCTGTACGGCCTCATCGCCCCGCTCACCGTCTGCTTGGGTCTGGACCGGCTGGCTGACCTGCTGATGGAGGGAGCAAACCTGGGCCGAAAGTGCGCTCTGAACATGAGACACGGGAAACCCCTGTGCTGAAAACACCTCAAGAAGACCTGCTGGAGTCTGAGCTGCCCAGATCTCTGTGTTTTTGACGTCATCTACAATGTGTGCTTGATTTCTTTGAGACTGCGACATGATGCTTCTGTACAACCTCGGTGATCTTTTCTTGCTTTCATTCTCTGTAGCTTATGCTCTCAGCACTGTTAAATATTCAAATTTATAGACTCTTTCAGTATTTTGGTGCTGATGTTGGTCTTGAAAATGACTGTCCTTGAAGATTTCCCTCAGATCTTCACTCATGGCTTTTCTACCTTAGCTAGGCCTGTAGCCAAATGATtctcattagctatgttttcattcaaagatgcaaattaaatgtatgcgcaaaactgTATTATGCATGAAAGATGttcgaataaagcagcgtttccatccaacga

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0099643 signal release from synapse biological_process
GO:0030388 fructose 1,6-bisphosphate metabolic process biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098657 import into cell biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0140115 export across plasma membrane biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0098739 import across plasma membrane biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0090533 cation-transporting ATPase complex cellular_component
GO:0030133 transport vesicle cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0045202 synapse cellular_component
GO:0005890 sodium cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0044306 neuron projection terminus cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0098533 ATPase dependent transmembrane transport complex cellular_component
GO:0005391 sodium molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024557 False 1782 lncRNA 0.40 2 51015111 51018821
TCONS_00025025 True 3027 lncRNA 0.39 1 51015398 51018424

Neighbor

gene id symbol gene type direction distance location
XLOC_012433 NA coding downstream 10116 50999852 ~ 51004995 (-)
XLOC_012432 NA coding downstream 30421 50975783 ~ 50984690 (-)
XLOC_012431 zgc:113377 coding downstream 524636 50478455 ~ 50490475 (-)
XLOC_012430 si:ch211-235i11.3 coding downstream 542126 50460321 ~ 50472985 (-)
XLOC_012429 si:ch211-235i11.6 coding downstream 578912 50433850 ~ 50436199 (-)
XLOC_012435 aqr coding upstream 1293 51020114 ~ 51121525 (-)
XLOC_012436 paplna coding upstream 119271 51138092 ~ 51199558 (-)
XLOC_012437 si:ch1073-469d17.2 coding upstream 182396 51201217 ~ 51202339 (-)
XLOC_012438 psen1 coding upstream 187404 51206225 ~ 51224800 (-)
XLOC_012439 trappc12 coding upstream 212389 51231210 ~ 51262430 (-)
XLOC_012419 NA non-coding downstream 951674 50052171 ~ 50063437 (-)
XLOC_012410 CU929037.3 non-coding downstream 1420374 49587635 ~ 49594737 (-)
XLOC_012407 NA non-coding downstream 1544442 49464309 ~ 49470669 (-)
XLOC_012440 NA non-coding upstream 557245 51576066 ~ 51618363 (-)
XLOC_012443 NA non-coding upstream 769891 51788712 ~ 51790824 (-)
XLOC_012447 NA non-coding upstream 1040188 52059009 ~ 52091999 (-)
XLOC_012448 NA non-coding upstream 1100753 52119574 ~ 52121058 (-)
XLOC_012449 NA non-coding upstream 1445777 52464598 ~ 52487693 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G158824 NA non-coding CI01000030 null 2206728 ~ 2207565 (-)