XLOC_012444 (exd2)


Basic Information

Item Value
gene id XLOC_012444
gene name exd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51796668 ~ 51818675 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024407
CAGCTGTTCATCACAGgcgtgtgtgtgaaagtgtcTACAGTTGTTTTCAGGGTTTACACACACTGACATCTGCCAAGTTTTCAGTGTGGAGTTGGTGCAGCTGCAGTGATGTCCAAGCAGAGCACGTTCACCGCCGCACTGGCCACCATGCTGGGAGCTACTCTCGGTGGGCTGTTCCTGTGGCGGAGCCTCCGAgcgcagaagaagaagaaaacccTCGCCAGCGCCGCACCCACTGAGCCCATTCTAGCCCAGAGAGACGCCGTCCTCCAGCCCTCGCAGGAGCCGTCAGCACCACCAGTATCCCAGAAGCCACTGCGGGCGCACACGCTGCTGGAGGAGCCGCCAGTGGTCATCAGCTCTCCTCAGGACTGGGACAATCTCTGGCCGGCTCTCCAGAAGGATCTGTCAATGTATCCAGTGCTGGGCCTGGACTGTGAATGGGTAAAAAGAGTTCGTGTGTCAGTGAAGGGCCGTGTGTCTGCAGTGTCTCTGCTGCAGCTCTCCTCGTTCACGGGCCGCTGTGTGCTGGTTCGTCTGCTGGCATTTCAGAATGCGCAACTGCCCAAATCTCTGATCGTGCTGCTCCGGGATCAGCGGGTGCTGAAAGTCGGCGTAGGCTGCTATGAGGATGGCAAACGTTTGGCGCAGGACCACGGCCTGACTCTGAGCTGCACTGTAGACCTGCGATATCTAGCCCTCAGACGGAGTAAGCAAGCGGTGCTGACTAACGGCCTGAGTCTGAAGTCTCTGGCTGAAGATTTGCTGAACGTCACGCTGGACAAATCAGTGGAGCTGCGCTGCAGTGACTGGGAGGCGGAGGAGCTGAGCCCCGAACAGATAACGTATGCAGCACGTGACGCCCAGATCTCCATTGCACTGTTTTTCCATCTGCTGGGCATGAACACAGAACGCCACCTGCCTGCAGAGGGTGAAGCGGTGTTTCTCCATCTGTCAGCATGCTGTCAGGGGCTCGTGGACGTGCCCTTCAGGGGGCGCTGTGGAGGAGATGGGGATGAGGGGGAGAGACGGCGGCGGAGTCGAAAATCCACTGTGGACAGTCCTGAGTCTGGAGACCAGCAAGTTCCAGACCCACGGCGCAACAAACGCAAACCACTGGGAGTAGGGTACTCAGCCAGGAAATCTCCTCTTTATGATAACTGTTTCCTTCATGCTCCTGACGGTCAGCCACTCTGCACATGTGACAAGAAGAAAGCTAAATGGTACCTGGAAAAGGGTATAGGAGAACTGGTGAGTGAAGATCCCTTCATCGTCCGGCTGCTGTTTGAGCCATCCGGCCGGCCAGACTCGGAGAAAGACTACTACCTCACTGCCAAAGAGAACCTCTGTGTGGTGTGTGGAAAAGTGGATTCCTACATCAGAAAAAACATCGTCCCACATGAGTATCGGCGGCACTTTCCATCAGAGATGAAGGACCACAACTCTCACGATATCCTGCTGCTGTGCACAGCGTGTCACGCCGCCTCAAACGTGCACGACGGCGCGCTGAAGGCGGAGCTGGCGGAGGAGCACGCGGCGCCGCAGGGCTGTGAGGAGGGAGTGCGGCTGCTGGAGGATGCAGACCGCCGACGGGTGCGCTCGGCCGCACGCGCGCTCCTCAGCGCCAGCGACGGGATGCCCACAGCCAGAAAAGAAGAGCTGCTGTCCGTCATCCAGAGCTGCTTCTGCAACGGCCAGCAGGTCACGCAGGAGGTGCTTCAGGACGCGGCGGCGCTGGAAACCAGGATCAGTAATGAGAATTACGTGCCACATGGACTGAAGGTGGTGCAGGCGTATGCCGAGCAGGGTCTCCGGGGCCTGATGGAGCTGGAGTGCCGCTGGCGACAGCACTTTCTGACCAGCATGCAGCCCCGACATCTGCCCCCGCTCTGGTGCGTCAACCACAACCACGACAAATATCTGCGCAAGTACGGTGAGGATCTGAAAATCCTGCTCAACTGAGCCCTCCGCCacacaatcacaaaaaaaaacgTTGTGCTTCAGCTGCTGGGAAAGGAAGGTTTCCACTATATGTGTGCAACACCTTGGTGTCCTTGTCCTAAATCGTTTGAGTGTGTACCAGAGACAGACTCCAAGCCCTGGTGTTGAgagagaaaggaagaaaaaaaaaaacaagactgtgGATCCAGTTGTTCTGGGCTCTAAGGGACCCGATGGAGATTGGGTAAGAGACTATTTCGGGGATCAGAAGCCACTGTGGTGAACGGCAGAACATTAACCTCAAGGATGTGCACAGAGAAATGGTGATCAGTTAAATAGCGACGAGCGTGCACACTTTTTAACTTAAAACGTTGAGAGAAAAAGCATTTAAGTTCCCTGTGAAGAGTAGATGCTACTGTATTTTAACCAGCCCAAACCTGCTCTTAATTCTTaattgtgaattgaataaaatattcataGCTTACAATTCCTGCAGGTCTGAGGCcatattaaatgttttgttatgtGTTAAATGAGTTTGCCTTCTGAGGCTATACTATAAAACGGCCATTTTTATGTAAGTGTTCATAATGGAGCTTTACAGTGTACAGTTTGGGTCTGTGTTTGTTTAGTGGGTTTTGAGGAAAACTCCATTTACCTTTTGAAAGATTGGACCAAATTGAGCACAGCTTTGCATATAATTTACATACCGTAAAGCCAGGACACCTCTGAAGCACGCCAGTTCCCAATTCTGGTGTGTATAAATACCCCTGACTTGGCGAAGATCGGCTAAAGAGATGCTGAAAGAAAGTTTCACAGTTTCACAGTGCTAGCTTGTGTTGTGGTTTCAGCCAGAGAGATTGAGCTCCATGGATGACTAATTTTGATGGCCAAATCAAGGACATTGAAGCCTGAGcctaacatttataatttaactTAAGAAACACTACAgcgcttctttttttatttgcatttgtccAGATGTAACCCATTGAAAGCTGCTGTGTTTCCTTAATGTCAGTGAAGAGATTAAATTTCATATGTTAAGACTGGA
>TCONS_00024408
AGAAGAAGACGCGCTGCAGCTGTTCATCACAGgcgtgtgtgtgaaagtgtcTACAGTTGTTTTCAGGGTTTACACACACTGACATCTGCCAAGTTTTCAGTGTGGAGTTGGTGCAGCTGCAGTGATGTCCAAGCAGAGCACGTTCACCGCCGCACTGGCCACCATGCTGGGAGCTACTCTCGGTGGGCTGTTCCTGTGGCGGAGCCTCCGAgcgcagaagaagaagaaaacccTCGCCAGCGCCGCACCCACTGAGCCCATTCTAGCCCAGAGAGACGCCGTCCTCCAGCCCTCGCAGGAGCCGTCAGCACCACCAGTATCCCAGAAGCCACTGCGGGCGCACACGCTGCTGGAGGAGCCGCCAGTGGTCATCAGCTCTCCTCAGGACTGGGACAATCTCTGGCCGGCTCTCCAGAAGGATCTGTCAATGTATCCAGTGCTGGGCCTGGACTGTGAATGGGTGTCAGTGAAGGGCCGTGTGTCTGCAGTGTCTCTGCTGCAGCTCTCCTCGTTCACGGGCCGCTGTGTGCTGGTTCGTCTGCTGGCATTTCAGAATGCGCAACTGCCCAAATCTCTGATCGTGCTGCTCCGGGATCAGCGGGTGCTGAAAGTCGGCGTAGGCTGCTATGAGGATGGCAAACGTTTGGCGCAGGACCACGGCCTGACTCTGAGCTGCACTGTAGACCTGCGATATCTAGCCCTCAGACGGAGTAAGCAAGCGGTGCTGACTAACGGCCTGAGTCTGAAGTCTCTGGCTGAAGATTTGCTGAACGTCACGCTGGACAAATCAGTGGAGCTGCGCTGCAGTGACTGGGAGGCGGAGGAGCTGAGCCCCGAACAGATAACGTATGCAGCACGTGACGCCCAGATCTCCATTGCACTGTTTTTCCATCTGCTGGGCATGAACACAGA

Function

symbol description
exd2 Predicted to enable 3'-5' exonuclease activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human EXD2 (exonuclease 3'-5' domain containing 2).

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-030131-6387 Predicted to enable 3'-5' exonuclease activity. Predicted to act upstream of or within nucleobase-containing compound metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Orthologous to human EXD2 (exonuclease 3'-5' domain containing 2).

Ensembl:

ensembl_id ENSDARG00000016117

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024407 False 2995 mRNA 0.52 10 51796668 51818659
TCONS_00024408 True 912 mRNA 0.58 6 51805978 51818675

Neighbor

gene id symbol gene type direction distance location
XLOC_012443 NA coding downstream 5844 51788712 ~ 51790824 (-)
XLOC_012442 atp6v1c2 coding downstream 116884 51655229 ~ 51679784 (-)
XLOC_012441 ccr6b coding downstream 145037 51642687 ~ 51651631 (-)
XLOC_012440 NA coding downstream 178305 51576066 ~ 51618363 (-)
XLOC_012439 trappc12 coding downstream 534238 51231210 ~ 51262430 (-)
XLOC_012445 numb coding upstream 3231 51821906 ~ 51893123 (-)
XLOC_012446 ERG28 coding upstream 115826 51934501 ~ 51938663 (-)
XLOC_012447 NA coding upstream 240334 52059009 ~ 52091999 (-)
XLOC_012448 NA coding upstream 300899 52119574 ~ 52121058 (-)
XLOC_012449 NA coding upstream 645923 52464598 ~ 52487693 (-)
XLOC_012434 NA non-coding downstream 777847 51015111 ~ 51018821 (-)
XLOC_012433 NA non-coding downstream 791673 50999852 ~ 51004995 (-)
XLOC_012432 NA non-coding downstream 811978 50975783 ~ 50984690 (-)
XLOC_012455 AL935141.1 non-coding upstream 800798 52619473 ~ 52619590 (-)
XLOC_012458 NA non-coding upstream 990595 52809270 ~ 52821854 (-)

Expression


Co-expression Network