XLOC_012441 (ccr6b)


Basic Information

Item Value
gene id XLOC_012441
gene name ccr6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 51642687 ~ 51651631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024404
ctcacacacataaagagcagagcagagcagagccgAGCAGAGGAGCTGTACTCCACGGCAGGTGCTTCACAACTCACAAAAACAGGTCAGCGGAAGTACAGTTATGGATAACGAAACGAATATGGACCTTGAATACTCTGATGATTATGCAGAGCCTTGTCCTCTGATGTGGTATCGCGACCATGAAGTGACCGTCCAGACCTACGTCTACTCCCTGATATGTGCGCTGGGCCTGGTGGGCAACGTTCTGGTGCTCCTGACCTACGCCTTCTACAAGAAAGCCAAATCCATGACTGATGTCTACCTGGTGAACGTGGCGCTGGCGGACCTGCTGTTCGTGGTGGCCCTCCCCTTGATCATCCACAACGAGCGCTCCCGCTGGAGCATGGGCACGTGGGCCTGTAAGCTGCTGCGCGGAGCTTATAGTATGAATGTGTACACTAGCACGCTCCTGCTAGCCTGCATAAGCGGAGACAGATACATCGCTATTGTACAGGCTCGACGCTCCCTCCGGACGCGCTCCCAGGCGAAGGCCTACAGCCGGATCATCTGCTTGGCGATTTGGTTTCTGGCGTTCGTCTTATCTCTGCCGACGGTAATCTACCACCAGGAGAAGAATCAAGAATGCATCACCATCTTCAGTGAGATGGAAACCGCACGGCTGGTGAAGATCCTGATTCCCAGCATGCAGATGGTGTTTGGGTTTCTGGTGCCGCTGATGGTGATGGTTTTCTGCTACTCATGGACCATGGTGACTCTTCTTAAGGCGCAGAACTTTCAGAAGCACAAGGCGGTGCGTGTTGTCCTGGCTGTGTTTTTCGTGTTTGTGCTTTGCCACCTGCCGTATAACGTAGCATTGCTGGTTTACACCAGTAAACTGTTTGTGGAGAGGAGTTGCGGGGAGGAGCAGGTCACGCTTATGACGCTTTCGGTTAGCCGGACCGCAGCGTATCTGCACTGCTGCCTCAATCCCATCCTCTACGCCTTCATCGGGGTCAAATTCAGAAGCCACTTCTGCCAGATCCTGCGGGATCTGCGGTGCCTCGGGAAGAGGTACATCTACTCAGGACGCTCCTCACAGCAGACGTCGGATTTGTACGTGTCAGCCACTAAAACGGTTGCCGAACAAAACGGCATCAACGACAACCCGTCGTCGTTTACATTGTGATGTGACAACACTGGATGTCGTTCAATGATAATTGCGCACGTTTTTCGCATTTATGCGCACAGACTTATGAAATCTTTCGATGTAATTTTGTAAATGCGAACAGCTTAACCTTGTTCGCAATCTCATTTGTCTGTTAGGGAATTTGGAGTCTTTAAAAGCGTgatagtggctcagtggctagcatgattgcctcacagcaagaagg

Function

symbol description
ccr6b Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CCR6 (C-C motif chemokine receptor 6).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8888 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CCR6 (C-C motif chemokine receptor 6).

Ensembl:

ensembl_id ENSDARG00000038968

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024404 True 1373 mRNA 0.52 2 51642687 51651631

Neighbor

gene id symbol gene type direction distance location
XLOC_012440 NA coding downstream 24324 51576066 ~ 51618363 (-)
XLOC_012439 trappc12 coding downstream 380257 51231210 ~ 51262430 (-)
XLOC_012438 psen1 coding downstream 417887 51206225 ~ 51224800 (-)
XLOC_012437 si:ch1073-469d17.2 coding downstream 440348 51201217 ~ 51202339 (-)
XLOC_012436 paplna coding downstream 443129 51138092 ~ 51199558 (-)
XLOC_012442 atp6v1c2 coding upstream 3598 51655229 ~ 51679784 (-)
XLOC_012443 NA coding upstream 137081 51788712 ~ 51790824 (-)
XLOC_012444 exd2 coding upstream 145037 51796668 ~ 51818675 (-)
XLOC_012445 numb coding upstream 170275 51821906 ~ 51893123 (-)
XLOC_012446 ERG28 coding upstream 282870 51934501 ~ 51938663 (-)
XLOC_012434 NA non-coding downstream 623866 51015111 ~ 51018821 (-)
XLOC_012433 NA non-coding downstream 637692 50999852 ~ 51004995 (-)
XLOC_012432 NA non-coding downstream 657997 50975783 ~ 50984690 (-)
XLOC_012419 NA non-coding downstream 1579250 50052171 ~ 50063437 (-)
XLOC_012447 NA non-coding upstream 407378 52059009 ~ 52091999 (-)
XLOC_012448 NA non-coding upstream 467943 52119574 ~ 52121058 (-)
XLOC_012449 NA non-coding upstream 812967 52464598 ~ 52487693 (-)
XLOC_012455 AL935141.1 non-coding upstream 967842 52619473 ~ 52619590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000316_01697843_01700472 NA coding CI01000316 null 1697239 ~ 1700472 (-)