G413041


Basic Information

Item Value
gene id G413041
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 7611480 ~ 7611811 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU474422
GGCTGTCGTCCCTGAAGGAAACCTCTTCTAAAGATGATGCACAAGAAAGCACGCAAACAGTTTGCTGAAGACAAGCAGACTAAGGACATGGATTACTGGAACCATGTCCTGTGGTCTGATGAGACCAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCGGCAACCAGATGAGGAGTACAAAGACAAGTGTGTCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCATGGTTACAGTTCATTGAGGGAACCATGAATGCCAACATGTACTGTGACATACTGAAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU474422 True 297 lncRNA 0.46 2 7611480 7611811

Neighbor

gene id symbol gene type direction distance location
CI01000300_07547135_07562235 UGT8 coding downstream 49245 7547048 ~ 7562235 (-)
CI01000300_07441608_07444010 NA coding downstream 167412 7441061 ~ 7444068 (-)
CI01000300_07317708_07388880 NDST3 coding downstream 222333 7317609 ~ 7389147 (-)
CI01000300_07266349_07270919 METTL14 coding downstream 340561 7266125 ~ 7270919 (-)
CI01000300_07252739_07257015 NA coding downstream 354465 7252739 ~ 7257015 (-)
CI01000300_07619188_07667913 TLL1, TLL1.S coding upstream 7377 7619188 ~ 7667913 (-)
CI01000300_07689056_07718164 CPE coding upstream 77069 7688880 ~ 7718437 (-)
CI01000300_07721516_07724293 MSMO1 coding upstream 109084 7720895 ~ 7725536 (-)
CI01000300_07731299_07746699 KLHL2 coding upstream 117803 7729614 ~ 7746699 (-)
CI01000300_07750575_07775271 NA coding upstream 138033 7749844 ~ 7775271 (-)
G413019 NA non-coding downstream 30911 7580352 ~ 7580569 (-)
G412963 NA non-coding downstream 73875 7513956 ~ 7537605 (-)
G412957 NA non-coding downstream 154376 7456193 ~ 7457104 (-)
G412913 NA non-coding downstream 213591 7397665 ~ 7397889 (-)
G412872 NA non-coding downstream 363407 7247838 ~ 7248073 (-)
G413072 NA non-coding upstream 195806 7807617 ~ 7807833 (-)
G413093 NA non-coding upstream 269693 7881504 ~ 7883796 (-)
G413127 NA non-coding upstream 482859 8094670 ~ 8099659 (-)
G413134 NA non-coding upstream 525879 8137690 ~ 8143059 (-)
G413142 NA non-coding upstream 540753 8152564 ~ 8152795 (-)
G412681 NA other downstream 921147 6652998 ~ 6690333 (-)
G412555 NA other downstream 1395901 6214920 ~ 6215579 (-)
G412378 NA other downstream 1850291 5711685 ~ 5761189 (-)
G411012 NA other downstream 3216359 4390320 ~ 4395121 (-)
CI01000300_04075307_04079312 NA other downstream 3529378 4074636 ~ 4080539 (-)
G413140 NA other upstream 534721 8146532 ~ 8146889 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other upstream 1357637 8958963 ~ 8973750 (-)
G414498 NA other upstream 2046238 9658049 ~ 9713722 (-)
CI01000300_10698449_10700497 NA other upstream 3084200 10696011 ~ 10701375 (-)
G414829 NA other upstream 3094189 10706000 ~ 10706323 (-)

Expression


Co-expression Network