XLOC_012538


Basic Information

Item Value
gene id XLOC_012538
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 4337720 ~ 4338483 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027026
ctgacccagctcaaaccagtgaccttcttgctGCCTGAGTCTCTACACCTCTCAGTTGAGTCCAGCAGACGTGGATGCGGGTGTTCAGACGTGTGCTCAGAGCCTGCTGAACGGGACGCGTTTGGGTCTCCATCTGCTCTGTACAGCTGGCTCTCTGACAGCTGGAAATGGATTCCTCTTAGATTGGTACCTGTGTCTCAGACTCAGCACCGCACACTGCCTGACCAGTGCATTAATGCAATTAATTTAGCCAGCAGTCTAAAAGCCAaagatggagagacagagagagagatgccAATAAAGTCATGCCATCAACACTGTCATAGCATCAGCAGTAATGCAGATACAGCACTTTcagcagagagagggagagagagagacagtcaGTCAGTGCACTCTGAAAATAAAGCATTCACAGAGGCAGGCGAGCCAGAGACGAGCTGTAATGCTCTCCTAAAGAACCTTTCAGTGAGCAATACTCAACACAGCCCTGCTCTTTTTAATTTGAAGAATATTTTAGGCATTTTTAGATGCTTATTATTGCGATTTTCAAGCATTTTGTCAGTGAAACCAGTTCTGGTAAACCTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027026 True 589 lncRNA 0.47 2 4337720 4338483

Neighbor

gene id symbol gene type direction distance location
XLOC_012537 NA coding upstream 1405 4325390 ~ 4336315 (+)
XLOC_012536 BX000522.1 coding upstream 70824 4101719 ~ 4266896 (+)
XLOC_012535 CABZ01070983.1 coding upstream 395584 3942020 ~ 3942136 (+)
XLOC_012534 NA coding upstream 685322 3646889 ~ 3652398 (+)
XLOC_012533 lrch3 coding upstream 691835 3579829 ~ 3645885 (+)
XLOC_012539 CABZ01047589.1 coding downstream 13153 4351636 ~ 4463718 (+)
XLOC_012540 FO834920.1 coding downstream 107088 4445571 ~ 4445680 (+)
XLOC_012541 AL954149.2 coding downstream 432653 4771136 ~ 4772058 (+)
XLOC_012542 CR792425.2 coding downstream 664786 5003269 ~ 5003384 (+)
XLOC_012543 NA coding downstream 703460 5041943 ~ 5042453 (+)
XLOC_012529 NA non-coding upstream 1000471 3336837 ~ 3337249 (+)

Expression


Co-expression Network