XLOC_012539 (CABZ01047589.1)


Basic Information

Item Value
gene id XLOC_012539
gene name CABZ01047589.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 4351636 ~ 4463718 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025125
CCGCTTTTAATTTTGATGTAGGCAACAGTTTGTTTCGTCCTTCGTGATTCATTGGATTCGTATGAAGGCGGGAATACTTATTCCTTCATGAAAGAAGCACAAGGCAATGCGGAAATCAATACTGGAGTCCCAGCGGTGCTGACCGGAGACAcagaagaaggggaaaaaagcacATCCGCACAGTGAAgatcacagaaaacacacacggACCACTGAGGAAGAGCATTCAGAGGTTAGCATTTTTGCTCAAAAATACACAAGCATC
>TCONS_00027027
TTTTGATGTAGGCAACAGTTTGTTTCGTCCTTCGTGATTCATTGGATTCGTATGAAGGCGGGAATACTTATTCCTTCATGAAAGAAGCACAAGGCAATGCGGAAATCAATACTGGAGTCCCAGCGGTGCTGACCGGAGACAcagaagaaggggaaaaaagcacATCCGCACAGTGAAgatcacagaaaacacacacggACCACTGAGGAAGAGCATTCAGAGGTGGTCCCACCAGGCATGTTCATCACCTTGAGGAGAGAAAAGGCGTTTGCTGCCAGTTGTTTCTATTGGTGGTTTTCCAGGAATCGGCAGCCAGGCTAATTCTGCTCGAGTGTCTCTTCAGACCTGGACACACACTGAGAGCTGGACCGTCCTACAATCACAGAGACCAGCAGAGACTCCAAAAGCAATGAAAGCAGGACCTCATGCGTGCAACTCAAGGTTGGGTACAGTTCACAAACATAATGTGTTCATCGGGTTGATGTCAAGAAGTTGCAGCAAGCTGTTTGCACATTTAGTTTAATTACTCAAGACGACAAGAAACTCTcaacaaggttataatagttttggatttttcattagttttagtttttatttcattttgactttttgttttcaaattccgttagttttaattagttttaatga
>TCONS_00027028
TTTTGATGTAGGCAACAGTTTGTTTCGTCCTTCGTGATTCATTGGATTCGTATGAAGGCGGGAATACTTATTCCTTCATGAAAGAAGCACAAGGCAATGCGGAAATCAATACTGGAGTCCCAGCGGTGCTGACCGGAGACAcagaagaaggggaaaaaagcacATCCGCACAGTGAAgatcacagaaaacacacacggACCACTGAGGAAGAGCATTCAGAGGTGGTCCCACCAGGCATGTTCATCACCTTGAGGAGAGAAAAGGCGTTTGCTGCCAGTTGTTTCTATTGGTGGTTTTCCAGGAATCGGCAGCCAGGCTAATTCTGCTCGAGTGTCTCTTCAGACCTGGACACACACTGAGAGCTGGACCGTCCTACAATCACAGAGACCAGCAGAGACTCCAAAAGCAATGAAAGCAGGACCTCATGCGTGCAACTCAAGTATCTGCTGAAGTCTTGACGGACAGCTCACACTCATAAACCAATAAAACCTCATGGGTCCCAGCACCGAGCCCTGATTCAGCACAGGTCGTTGGTTCGCCCTCAGCAGATCCACAAACACACAGCGTTGTGAGAGTTTTATTGTTTGAGTTTGCCATGAGCTGAGAGAGACTGAAAGAGAAGATTCCTGCCACTCAGAAAATAAGCAACAAGTAATAAAGCAACCAAACaggaagaaaagaaagagaaaaaggaaATG
>TCONS_00025126
ATTATATTTCCTTTTCTATTGATTCTAGACTGAAATATGCCTTAGACATGTTTGTGGTCTGCTTTTGGTGAGATTTCTGGCTGTAGGAGGTTTTGATAACAGCGAGATTCACTGCAGGTTTGTAGATAACGTGTCTCTCATCTACCATTAACACATAACACTTGTTTTCTGCTCTGAAGGATCTGTGTTTAGCTATGTGACATATTTCTCTCTTTCGTCCTCTTTATCAGAAGCAGTGGAGTGAATCTTGCCATCCAGCCTGAGAACACAAATCCTCCTTGTCTGTACATTTatctggagtgtgtgtgtctgcgtgccATGTTTAAAGCTTGTCATATAGCAAACGCAGGCCTCGTTTCATGTGCAGCGGCGCTTTCTTTGTTGTGACAGGACCCTTTCTCAGTTTGTGCTTCTGTTTTGTATCACACACTTTATCCAGAAGCACAAGGCAATGCGGAAATCAATACTGGAGTCCCAGCGGTGCTGACCGGAGACAcagaagaaggggaaaaaagcacATCCGCACAGTGAAgatcacagaaaacacacacggACCACTGAGGAAGAGCATTCAGAGGTGGTCCCACCAGGCATGTTCATCACCTTGAGGAGAGAAAAGGCGTTTGCTGCCAGTTGTTTCTATTGGTGGTTTTCCAGGAATCGGCAGCCAGGCTAATTCTGCTCGAGTGTCTCTTCAGACCTGGACACACACTGAGAGCTGGACCGTCCTACAATCACAGAGACCAGCAGAGACTCCAAAAGCAATGAAAGCAGGACCTCATGCGTGCAACTCAAGGTTGGGTACAGTTCACAAACATAATGTGTTCATCGGGTTGATGTCAAGAAGTTGCAGCAAGCTGTTTGCACATTTAGTTTAATTACTCAAGACGACAAGAAACTCTcaacaaggttataatagttttggatttttcattagttttagtttttatttcattttgactttttgttttcaaattccgttagttttaattagttttaatga

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117374

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025125 False 265 lncRNA 0.45 2 4351636 4444370
TCONS_00027027 False 648 lncRNA 0.43 3 4351646 4455720
TCONS_00027028 False 699 lncRNA 0.47 5 4351646 4463718
TCONS_00025126 True 1003 lncRNA 0.43 2 4443761 4455720

Neighbor

gene id symbol gene type direction distance location
XLOC_012538 NA coding upstream 13153 4337720 ~ 4338483 (+)
XLOC_012537 NA coding upstream 15321 4325390 ~ 4336315 (+)
XLOC_012536 BX000522.1 coding upstream 84740 4101719 ~ 4266896 (+)
XLOC_012535 CABZ01070983.1 coding upstream 409500 3942020 ~ 3942136 (+)
XLOC_012534 NA coding upstream 699238 3646889 ~ 3652398 (+)
XLOC_012541 AL954149.2 coding downstream 307418 4771136 ~ 4772058 (+)
XLOC_012542 CR792425.2 coding downstream 539551 5003269 ~ 5003384 (+)
XLOC_012543 NA coding downstream 578225 5041943 ~ 5042453 (+)
XLOC_012544 NA coding downstream 648066 5111784 ~ 5121106 (+)
XLOC_012545 serpini1 coding downstream 673523 5137241 ~ 5170417 (+)
XLOC_012549 CZQB01123183.1 non-coding downstream 814157 5277875 ~ 5277991 (+)

Expression


Co-expression Network