CI01000302_01116405_01119378


Basic Information

Item Value
gene id CI01000302_01116405_01119378
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000302
NCBI id null
chromosome length 1458622
location 1114919 ~ 1119378 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000302_01116405_01119378.mRNA
TGTGCAAGGCAAACATGAGTTTTTAAGCAACAACTTTGGTCAGGTTGTTTTGCTCGTCCGTTCTCCCCTGTGGAATGAACTAACAGTTGAAGTGCTGGAGCCTGCAGTAACTCAAGCCCCTCAGCTATCAGAGATGGGGGGCGGCGGATCAGCGTCTAAATGTAAGCAACAGGATGTGACCAATGAGCGCCACCTAGTGTTAGACTTAGATCCGTGGATTCTCCTAGGATTAAGTCCTGTAGATTTCCTGTTTGACTGTCACATAGATCGACTCTGTGATGTGTTCAGCACACAGAGCGTGACGGACCGCTGGGCCCCTGAGGTTCAGCGCCTCTGTCCGGGCGTTCCCATCATCCTCGTGGGCACCCAGTGCGACTTGCGGGAGGATGTCCAGGTGCTGATCCGACTCGCAGACGGCCAGGAGAAACCGGTGAGCAGCGACGAGGCCCACCTGTGCGCCCGGAGCATCGGTGCCGTAACGTTTGCAGAATGCTCTGCTCTGACACAGAAGAACCTGAAGGAAGTGTTCGACGGCGCCATCTTGGCGAGTATGAGGCATGCGGAGGAGGCGGCATGGCCGAGGATTCAGACGCTGAGAGAAAAAACTCCAGATAAAATCAAACAGCTCTCAGAAACATGGTGGAGGAAACTGAGCTGTGTTCAGAGCTTTGACCTTCAGTGATGCGGAAGTTACGTTACACTGGTGGGTTTGAGTTGCCTTTCTTGCTGAAGTCAGATGCTCACAATTTAAAATGCATCCTTAAAGTCAAGATGAAATGGGACTCACAAACCCATTTTACTGTGATGTATTTCCAAATACAATTGTAGGACAGGATTAGTTCACTTCAGAATGAAAATTTCCTGATAATTTACTCACCCCCATGTCATCCAAAATGTTTATGTCTGTCTTTGTTCAGTCGAAAAGAAATTAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCTTATAGTGGACTTCAACAGTTACCAACGGGTTGAAGGTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGGACTCTACACGATCCCAGACGAGGAATAAGGGTCTTGTCTAGAGAAACAATCGGCCATTTTCTAAATAAAATAAAAATGTACTTTTTAACCACAAATGCTCGTCTTGTACTGCTCTGCGATGCGCCACGCATTACATAATCACGTTGGAAAGGTCACGCGTGACGTAGGCGGAAGTACTGCTGTAAGGCAAAAAACTCCATCTCATTTTCTCCTCCAACTTCAAAATCGTCCGACATCGTTGTTTTACCTTTTTTTGTAAAGGGCGATTGACTTAGTCTTTGCACATTCACTCTGTAAACACATTAGATCGGTACTTCTGCCTACGTCATTCAATTGTTTCGCTAGATAAGACCCTTATTATTCATTTGGGATCGTGTGGAGCGCTTTGAAGCTGCACTGAAACTGACATTTGGACCCATTGATCCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTCATTTCTTTTCAACTGAAGAAAGAAAGACATAAACATTTTGGATGACATGGAGGTGAGTAAATTATCAGGAAATTTTCATTCTGAAGTGAGCTAATCCTTTAAAGGGATAGTTCACCCAAAAATGAAAATTGTCATAATTTACTCGCCCTCAAGTTGATGGACCCCATTGACTTCCATAGTATGGGAAAAAAATACTATGGAAGTCATTGGGGACCATCAACTGTTATTCTTCAAAATATCTTCTTTTGTGTTCAGCTGATGAAAGAAACTCGTACAGGTTTGGAACAACTTTAGGGTGAGTAAATGAAGACAATTTTCAGTTTTGGGTGAACTATCCCTTTAAGAAAGTAAATAGGGTCAGTTTTGATTTCATGATTTAAGGACATTTATTTTATACATCAACAAAGTGATCATTTCTGTTCAAAGGTTATGTAAAAACGTTGTTTTTTTAAGTAATTTTGCAGATTTCAAAGATGAAAAATAAA
>TU479584
GAGGAATAAGGGTCTTGTCTAGAGAAACAATCGGCCATTTTCTAAATAAAATAAAAATGTACTTTTTAACCACAAATGCTCGTCTTGTACTGCTCTGCGATGCGCCACGCATTACATAATCACGTTGGAAAGGTCACGCGTGACGTAGGCGGAAGTACTGCTGTAAGGCAAAAAACTCCATCTCATTTTCTCCTCCAACTTCAAAATCGTCCGACATCGTTGTTTTACCTTTTTTTGTAAAGGGCGATTGACTTAGTCTTTGCACATTCACTCTGTAAACACATTAGATCGGTACTTCTGCCTACGTCATTCAATTGTTTCGCTAGATAAGACCCTTATTATTCATTTGGGATCGTGTGGAGCGCTTTGAAGCTGCACTGAAACTGACATTTGGACCCATTGATCCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTCATTTCTTTTCAACTGAAGAAAGAAAGACATAAACATTTTGGATGACATGGAGGTGAGTAAATTATCAGGAAATTTTCATTCTGAAGTGAGCTAATCCTTTAAAGGGATAGTTCACCCAAAAATGAAAATTGTCATAATTTACTCGCCCTCAAGTTGATGGACCCCATTGACTTCCATAGTATGGGAAAAAAATACTATGGAAGTCATTGGGGACCATCAACTGTTATTCTTCAAAATATCTTCTTTTGTGTTCAGCTGATGAAAGAAACTCGTACAGGTTTGGAACAACTTTAGGGTGAGTAAATGAAGACAATTTTCAGTTTTGGGTGAACTATCCCTTTAAGAAAGTAAATAGGGTCAGTTTTGATTTCATGATTTAAGGACATTTATTTTATACATCAACAAAGTGATCATTTCTGTTCAAAGGTTATGTAAAAACGTTGTTTTTTTAAGTAATTTTGCAGATTTCAAAGATGAAAAATAAAGACATAAGAGAAATTTATAAATTATTGCATACAGATTATTGTATTTTTCTTTACAGATAAATGTTGTAAATGCCCTTGTGGTTACCAAGAACTGGATAGCATTTGTAGACATATGTGTAATTAAATTCTGTATTATTATTATTAGAGAATAGTAAAAATTAAAGGAG
>TU479585
CTGAGGTTCAGCGCCTCTGTCCGGGCGTTCCCATCATCCTCGTGGGCACCCAGTGCGACTTGCGGGAGGATGTCCAGGTGCTGATCCGACTCGCAGACGGCCAGGAGAAACCGGTGAGCAGCGACGAGGCCCACCTGTGCGCCCGGAGCATCGGTGCCGTAACGTTTGCAGAATGCTCTGCTCTGACACAGAAGAACCTGAAGGAAGTGTTCGACGGCGCCATCTTGGCGAGTATGAGGCATGCGGAGGAGGCGGCATGGCCGAGGATTCAGACGCTGAGAGAAAAAACTCCAGATAAAATCAAACAGCTCTCAGAAACATGGTGGAGGAAACTGAGCTGTGTTCAGAGCTTTGACCTTCAGTGATGCGGAAGTTACGTTACACTGGTGGGTTTGAGTTGCCTTTCTTGCTGAAGTCAGATGCTCACAATTTAAAATGCATCCTTAAAGTCAAGATGAAATGGGACTCACAAACCCATTTTACTGTGATGTATTTCCAAATACAATTGTAGGACAGGATTAGTTCACTTCAGAATGAAAATTTCCTGATAATTTACTCACCCCCATGTCATCCAAAATGTTTATGTCTGTCTTTGTTCAGTCGAAAAGAAATTAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCTTATAGTGGACTTCAACAGTTACCAACGGGTTGAAGGTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGGACTCTACACGATCCCAGACGAGGAATAAGGGTCTTGTCTAGAGAAACAATCGGCCATTTTCTAAATAAAATAAAAATGTACTTTTTAACCACAAATGCTCGTCTTGTACTGCTCTGCGATGCGCCACGCATTACATAATCACGTTGGAAAGGTCACGCGTGACGTAGGCGGAAGTACTGCTGTAAGGCAAAAAACTCCATCTCATTTTCTCCTCCAACTTCAAAATCGTCCGACATCGTTGTTTTACCTTTTTTTGTAAAGGGCGATTGACTTAGTCTTTGCACATTCACTCTGTAAACACATTAGATCGGTACTTCTGCCTACGTCATTCAATTGTTTCGCTAGATAAGACCCTTATTATTCATTTGGGATCGTGTGGAGCGCTTTGAAGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000302_01116405_01119378.mRNA False 2001 mRNA 0.43 3 1115086 1119378
TU479584 False 1114 lncRNA 0.35 1 1114919 1116032
TU479585 True 1113 lncRNA 0.46 1 1115657 1116769

Neighbor

gene id symbol gene type direction distance location
CI01000302_01043975_01048876 TAF5L coding downstream 66210 1043352 ~ 1048876 (-)
CI01000302_01033394_01042837 CAPN9 coding downstream 72249 1033042 ~ 1042837 (-)
CI01000302_01024553_01031712 LTV1 coding downstream 83374 1023961 ~ 1031712 (-)
CI01000302_00991607_00995346 NA coding downstream 119347 991296 ~ 995739 (-)
CI01000302_00897913_00921331 XPO1, XPO1A, XPO1B coding downstream 193644 897757 ~ 921442 (-)
CI01000302_01165866_01178482 NA coding upstream 45649 1165027 ~ 1178482 (-)
CI01000302_01211614_01228844 SLC9A3R2 coding upstream 90489 1209867 ~ 1229710 (-)
CI01000302_01232142_01237730 NTHL1 coding upstream 112704 1232082 ~ 1237730 (-)
CI01000302_01290758_01347126 PKD1 coding upstream 171189 1290567 ~ 1347126 (-)
CI01000302_01410901_01425930 NA coding upstream 291256 1410634 ~ 1426054 (-)
G417498 NA non-coding downstream 11573 1081194 ~ 1103513 (-)
G417497 NA non-coding downstream 34208 1080606 ~ 1080878 (-)
G417496 NA non-coding downstream 34689 1080113 ~ 1080397 (-)
G417466 NA non-coding downstream 47526 1064008 ~ 1067560 (-)
G417468 NA non-coding downstream 58688 1050924 ~ 1056398 (-)
G417528 NA non-coding upstream 825 1120203 ~ 1120420 (-)
G417529 NA non-coding upstream 1875 1121253 ~ 1121460 (-)
G417546 NA non-coding upstream 67561 1186939 ~ 1187273 (-)
G417544 NA non-coding upstream 68653 1188031 ~ 1188233 (-)
G417644 NA non-coding upstream 327373 1446751 ~ 1447021 (-)
G417463 NA other downstream 189581 925176 ~ 925505 (-)
G417414 NA other downstream 434592 679622 ~ 680494 (-)
G417264 NA other downstream 927100 186607 ~ 187986 (-)
G417501 NA other upstream 30035 1149413 ~ 1150962 (-)

Expression


Co-expression Network