Gene
RNA
| Item | Value |
|---|---|
| gene id | G417497 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000302 |
| NCBI id | null |
| chromosome length | 1458622 |
| location | 1080606 ~ 1080878 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU479549 | True | 273 | lncRNA | 0.43 | 1 | 1080606 | 1080878 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000302_01043975_01048876 | TAF5L | coding | downstream | 31730 | 1043352 ~ 1048876 (-) |
| CI01000302_01033394_01042837 | CAPN9 | coding | downstream | 37769 | 1033042 ~ 1042837 (-) |
| CI01000302_01024553_01031712 | LTV1 | coding | downstream | 48894 | 1023961 ~ 1031712 (-) |
| CI01000302_00991607_00995346 | NA | coding | downstream | 84867 | 991296 ~ 995739 (-) |
| CI01000302_00897913_00921331 | XPO1, XPO1A, XPO1B | coding | downstream | 159164 | 897757 ~ 921442 (-) |
| CI01000302_01116405_01119378 | NA | coding | upstream | 34208 | 1114919 ~ 1119378 (-) |
| CI01000302_01165866_01178482 | NA | coding | upstream | 84149 | 1165027 ~ 1178482 (-) |
| CI01000302_01211614_01228844 | SLC9A3R2 | coding | upstream | 128989 | 1209867 ~ 1229710 (-) |
| CI01000302_01232142_01237730 | NTHL1 | coding | upstream | 151204 | 1232082 ~ 1237730 (-) |
| CI01000302_01290758_01347126 | PKD1 | coding | upstream | 209689 | 1290567 ~ 1347126 (-) |
| G417496 | NA | non-coding | downstream | 209 | 1080113 ~ 1080397 (-) |
| G417466 | NA | non-coding | downstream | 13046 | 1064008 ~ 1067560 (-) |
| G417468 | NA | non-coding | downstream | 24208 | 1050924 ~ 1056398 (-) |
| G417472 | NA | non-coding | downstream | 99926 | 944022 ~ 980680 (-) |
| G417461 | NA | non-coding | downstream | 156875 | 923484 ~ 923731 (-) |
| G417498 | NA | non-coding | upstream | 316 | 1081194 ~ 1103513 (-) |
| G417528 | NA | non-coding | upstream | 39325 | 1120203 ~ 1120420 (-) |
| G417529 | NA | non-coding | upstream | 40375 | 1121253 ~ 1121460 (-) |
| G417546 | NA | non-coding | upstream | 106061 | 1186939 ~ 1187273 (-) |
| G417463 | NA | other | downstream | 155101 | 925176 ~ 925505 (-) |
| G417414 | NA | other | downstream | 400112 | 679622 ~ 680494 (-) |
| G417264 | NA | other | downstream | 892620 | 186607 ~ 187986 (-) |
| G417501 | NA | other | upstream | 68535 | 1149413 ~ 1150962 (-) |
