XLOC_012600 (odf3b)


Basic Information

Item Value
gene id XLOC_012600
gene name odf3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 7611298 ~ 7622892 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025214
cataattaaaagtaTCTCTAAAGGCAAAAGTTGTTGAATTTTGTTAATTAATaccttaatttgtttaataattaatcGCACTGGATTCATAATGAGCAGCTCCTCGTGAACTTCTAACCAAAGGAATGTCACTCAAACTGACATCAATCGCCATGGTGACGGCGTCATAGAGATGCAAAagaaaacaattataaacaataaaaacagtcgCTGGAGCTGCAGGTTTGATTAGAGCCCTTTACCAGCTacagtttattttactttcaCATCTCTGTTATGTAGTTTTTAGACAGATATTTTGAGTCAGCATCGTCGTTTTAGGTTATCCAAGTGTAACTGTTTATCGTTTGACATCTTAAAGTAGGCTAATCAACGCATTTAACAGTTAACAGTACACAGTCGGTGCGAAAACAACGTTTCTTTAGAAAAATCTCCTCAAGATCGATAGATATCTTTTATATAGGCCTACTAAAATTAAGCAGACGTCATGTCACCTGTGGATGTATGGGTAGGCTCTTGGAGGCCCCATAAGCCAAGGGGCCCCATTGCTGCAATGTATAACAGTCCAGGGCCAACATATGCTCTGCCAGGGGCAACTGGAATGAATAATCATGACCCACGTATGCAGAAAGGCCCAGCGTTTAGCTTCGGCATACGTCATCACAACTTTCATGGCAACTATTCTCCAGGACCCGGATACCTCGTTCCCTCCAACATCACGAGGGTGGGTCGGGATGGGACACCTGCGTACTCTGTCTATGGCCGTCGCAAGGATATCCAGCCCTTCCAGACCCCTGGCCCAGGCAGTTACTCTCCTGAAAATGCAACAAAAGCCACCTATCTCTCACCCCCTGCATTCACCTTATCTGCAAGGACTAAGTTGTTCCGTAATGACCAAACTCCAGGTCCAGCTGCGTACATGCTTCCCCCAGTTTTAGGACcaaaagttgtaaataaaacatCTGCCCCAAACGTCTCCTTCAGCGGTCGTAGTGCAATCGGCAGCTTCCATGAAGATCTACGAAAGACTCCAGGCCCAGGGACGTACCAAGTGGTGGATCCATGTGTGTACAAACACAAAGGGCCTCAGTACAGTATGACAGGTCGTAACATGATGCCTGGAGACATGACCAAGAAGCCAGGACCTGGAGCCCACTATCCAGAAATGGTTTGCTTCACAAGAGCCAAAGCTCCCAGCTTCTCCTTTGGAATTCGTCATTCTGAGTACGTCGCTCCAACAATTGTGGATGGTGAAGATTAAGCAGGTCATTTCGAAATAAATTCTGTCACCTAAGCTA
>TCONS_00025215
ataatttagttattttgatcattaaacaagtagtttttgttttgtatttcattaaaaatattgtttttcaatTTCAGCAGACGTCATGTCACCTGTGGATGTATGGGTAGGCTCTTGGAGGCCCCATAAGCCAAGGGGCCCCATTGCTGCAATGTATAACAGTCCAGGGCCAACATATGCTCTGCCAGGGGCAACTGGAATGAATAATCATGACCCACGTATGCAGAAAGGCCCAGCGTTTAGCTTCGGCATACGTCATCACAACTTTCATGGCAACTATTCTCCAGGACCCGGATACCTCGTTCCCTCCAACATCACGAGGGTGGGTCGGGATGGGACACCTGCGTACTCTGTCTATGGCCGTCGCAAGGATATCCAGCCCTTCCAGACCCCTGGCCCAGGCAGTTACTCTCCTGAAAATGCAACAAAAGCCACCTATCTCTCACCCCCTGCATTCACCTTATCTGCAAGGACTAAGTTGTTCCGTAATGACCAAACTCCAGGTCCAGCTGCGTACATGCTTCCCCCAGTTTTAGGACcaaaagttgtaaataaaacatCTGCCCCAAACGTCTCCTTCAGCGGTCGTAGTGCAATCGGCAGCTTCCATGAAGATCTACGAAAGACTCCAGGCCCAGGGACGTACCAAGTGGTGGATCCATGTGTGTACAAACACAAAGGGCCTCAGTACAGTATGACAGGTCGTAACATGATGCCTGGAGACATGACCAAGAAGCCAGGACCTGGAGCCCACTATCCAGAAATGGTTTGCTTCACAAGAGCCAAAGCTCCCAGCTTCTCCTTTGGAATTCGTCATTCTGAGTACGTCGCTCCAACAATTGTGGATGGTGAAGATTAAGCAGGTCATTTCGAAATAAATTCTGTCACCTAAGCTATAATCTGTCATATCAGGTCTTAATATTGCTAGTCATGGTGTTCTAGTAAAAATCTTGCTCAAAGATGCAATAATTGTGCCACAATATGAGAATTAAGCTACTTTATCACTACTTCAGTCTGCAGTTATTATGcttcagaaatgtttttaaaatctcacaaaatcaaaatgtatgcttATTTTGTTACCGCACATACTTAGCCTTAAGGGGAATCATTAATTTGTGCAAGTTGAGCCCGTCAAAAAAATTGTAATCTTGAATCAAAAACTAACCAGTGGCtgtccttctctgatgatgtcagttggATAGCTTGGTTGAAATATGCTTTACCACGCCCGTCGAACTGTTCTTGTGTTGCAAGTGAAGGATGAGAGGAGGAGTGCAAAAATTAAACTCCGCCCCccactaaatattttattaaatttgaaaatacatgatcatactaaaataaagaGCCTGCAGCAACCTCCGGTTGACACAGACTTTAACTTTTTGATTTGATGCTTAAAAAATGGTTAAAGTTTTGAAAATAGCTGTATCCAGACTACTCAAAAGACCATTTATTGAAAAGAACCATACAAAACCAAGAATCCATTTCCACCATGAAGAATCTTTTTGAAACTAAAAGGTTCCACAGATGCCTTTGTTTGTAGGAGTAATATAGATTGCACCTTTAAAGGTGGCGGTTGGCGGTTGACCAGGTACTGTAACCCATTAGGTTTTGGAACAGAGCTAAAATGGCACAGAGATGGCAAACAGCACTGATGATTACTGTGTAAATCATGAATAAGTAAAACCTTTCAAGCACAATATTGGTGTCACTTTATTCTTATTTCACACTTTAGTCATACAGCAGGTGATCATTTAATCAAGTACACATATTTTTACAAGTACAATATTTTTAGTGACAAAATACATAAAACTTTTTTGTCGGGTTCATAAAATAATGTACTATTGAATCTAGGATTCAGTGCACTTATATGCGAGGCTAAGTCCTTTTTCATTCTTTGAGAAGAAGTAAAAACAAATGGGAAAATAGTTTTctttgataataatgatgatagtaTTATAGTGTTATTGAATGTCCAGGCTCATCTGTGCTGCTGAGAGCAATGTTTAGATAAATACTGTATGGCAGGGGTTcttaaactcggtcctggagggccggtgtcctacagatttttagcttcaacttgcctcacatctgcaaggatgtttctagaaagcctagtaagagcttgattagataggtgtgtctgattggggttaaagctaaaatctgcaggacactggacctccaggactgagctTAAAAACCATTGCTGTATGTAATATGTTTATGCATACTTTCTTCTCCATAAACagactgaattattagcccctctttgaatttttccCCCTTTtgacatttcccaaattatgtttaacagagcaaggaaatttttacagtatgtctgataatattttcctttcagtagaaagtcttatttgctttatttcggctagaataaaagcagtttttaatttttttaataaccattttaaggacgaaattattagcccctttaagctaactttttttcgatactctacagaacaaaccatttttatacagcaacatgcctaattaccctaacctgcctagttaacctaattaacctagttaagaaaaaataaatcagttactagaaattataataatttattatatttaatataattttttaaataatatttattataatttattagaaaaaagttattaaactattatgtttagaaatgtgttgaagaaatcttcgctccggaaaaaataaagagggaggctaataaatcaggagggctaataattctgacttcaactggatataTATTCTGAGTTCTTTACATAAAAGCTGGGGAgttttttacttaaaaacatGGGTATTCgttaaaaatggcttttataaAGTCCTATCATTAAAACAactataattatttacatttgcattctGAGTTCACAAAATCAGTCTATAGACTTCCACATCAACCAaatcttttacacttttttttacaaactgtaaaaaaatattaaactacaaattattaataaaaagtaattaatacataaaatCTTACATATAGCTCTTATGAACTTatataatttaaacaacaatttaTAATTGGCATTACACATTCTGAGTTCACATAAATATCAGTCTTTAGACGTCCACATCAACTAAGGAAGTTGAGGAATTTTTacactttgttttttttacaaactgttcACAAATTATCAATaacacataattaataaaaaaaattgacataaTTAAAACTCATATGTAAAATAACATCATTATTATCTATGTTATGCATTCTGAGTTCACATAAAATCCGTCTATAGACTATAAAAGTAATTTGGGgaatttttacactttttttatttaacaaaatcttCACAAATTGTCAATAACACATGATTAAAGCCgaggtcacactgcactttttcaccccattgacttccatccaTGCACATGCGCATGTGAATGCGGCAGACCGGAAACGAAAACTCAAGTTACAAGTTTCACCAGCatggtgaactctgaccagcaaaatcgcatcacgtgaCTGCATGAAACCAATAGAGAATCAATACATGACCTCtgtactgaaattaaaaatatggaccaatcattcccttttttaaaagtctaatcatctcgtttaatcccacccctttttcgcagcaccgtacgacagaattttgcaagctctaATGTGACCGCGGCATAATACATGAAAAATTGCCTTTATAAACTCATAATTAAAACGACATCATTATTATCTACATCATGCATTCTGAGttcacattaaaaaaacagtCTATAGACTAAAAAAGGAATTTGGGGAACTTGTTTTTCCACAAACTCTTcacaaattttcaaaaatattaataatacatatataaatctTACATATAGCTCTAATAAACTCATATTGGCAATAATTATGTTTCCACTGCAGTCTTCAATGGTACGATCCTCAGCGGATGCTTCATACAGTGAacataaaaataaggaaacactctCTCTGTGAAAGTGTGTTTAAACACATGCAGACTGATATTGCGGTCCGAGTCGATGAATGTGACTTTACCCTTATCCCAGTCCAGCTTCACCCTGATCCTCTTAATTTTCTGGCTGACTCGCAGCAGCGTGATGGCCTCTGGAGAATACCCCTTCCCGTATTTACCATTGCAAAAGCCCACATACCACATGCCCATCCTGAAGTGGTTGAGTCTGTTTTTGTAAGTGGATTCTGTGATCACTCCGATGGCCCACGCTGTGTTGTCGCCCACCTCCACGTCCCAGGTGTGAGACCCTGCGGTGAAGCCCTCAGAACCGAGAATACTGGTGTAGCCGTCATATCTTTCGGGGTTTGCTGGAAGCTGCTGGAAGTGTTCGTCAGAGTATGTGATAGTGGTCAGATCATCCGACACCAGCAGGTAAGGATGGCCGGTGTTGGGGTCAAAGGTTACTGGGTCTGTGAGGAAAGAGATACTTTTTTATTACAGTCTtctaaaatatctgtaaatgagtggtttttcttattttgtgattcatatttttaatttccctgtttatttatgcttttgaattgcttcataggaccttgatctttcgtccaacaactttttttttttttggaaatttttatttaaaattttttaatatatatttttccagaaCAACCCCTTCCCCAACAATTTAGCCCCTTACAGATGAGGGAGTACATAGGAAAATGAAATTATAatgaaatgatatatatatatatatatatatatatatatatatatatat

Function

symbol description
odf3b Predicted to be located in cytoplasm. Predicted to be active in cytoskeleton. Is expressed in peripheral olfactory organ; pronephros; and testis. Orthologous to human ODF3 (outer dense fiber of sperm tails 3) and ODF3B (outer dense fiber of sperm tails 3B).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7464 Predicted to be located in cytoplasm. Predicted to be active in cytoskeleton. Is expressed in peripheral olfactory organ; pronephros; and testis. Orthologous to human ODF3 (outer dense fiber of sperm tails 3) and ODF3B (outer dense fiber of sperm tails 3B).

Ensembl:

ensembl_id ENSDARG00000042396

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025214 False 1298 mRNA 0.45 7 7611298 7619050
TCONS_00025215 True 4738 mRNA 0.36 6 7612438 7622892

Neighbor

gene id symbol gene type direction distance location
XLOC_012599 zgc:77752 coding upstream 2125 7594012 ~ 7609173 (+)
XLOC_012596 zgc:77650 coding upstream 17714 7553950 ~ 7593584 (+)
XLOC_012597 CR318588.3 coding upstream 23877 7569329 ~ 7587421 (+)
XLOC_012598 NA coding upstream 30103 7575848 ~ 7581195 (+)
XLOC_012595 arf5 coding upstream 57542 7543347 ~ 7553756 (+)
XLOC_012601 rabl2 coding downstream 16509 7639401 ~ 7648720 (+)
XLOC_012602 NA coding downstream 28858 7651750 ~ 7663657 (+)
XLOC_012603 LO018377.1 coding downstream 251739 7874631 ~ 7874748 (+)
XLOC_012604 LO018377.2 coding downstream 259887 7882779 ~ 7882893 (+)
XLOC_012605 CU138508.1 coding downstream 375684 7998576 ~ 7998697 (+)
XLOC_012593 NA non-coding upstream 133146 7449248 ~ 7478152 (+)
XLOC_012592 NA non-coding upstream 170993 7438247 ~ 7440305 (+)
XLOC_012583 CU467655.2 non-coding upstream 599056 7000194 ~ 7012242 (+)
XLOC_012606 CABZ01052527.1 non-coding downstream 478013 8100905 ~ 8103196 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_11276658_11278225 NA coding CI01000013 null 11276634 ~ 11278730 (-)