XLOC_012583 (CU467655.2)


Basic Information

Item Value
gene id XLOC_012583
gene name CU467655.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 7000194 ~ 7012242 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025180
atatatatatatatatggttttccCTATTACATTTAGAAAGCATTGTGATGTTTCTGCTCAGGCAGCTCAGACGGATGACCCTCTGAAGTACGCAGTTGCCACAGTTCTGGTAAGGGTTCTTGCAGAAAacaagtttcccccacaattcagcCGCTCAGCATATCGTGGCTTCGTCAGCGAGAGCACAAGTCCGGCTTCACTCGTCATGACGTACGCCAACAAATTACTCATCCTGGAGGCCACAGATCAAGACTTTACCAACGTACGTGACTACAAaaccacaaacacactgacaacATCCAGTTTCAACATCACAAAGCCACTGTTTTGAcactcattgcataaaataaggATTTATGTTCCAGTTTAAGCCTAAGAAATCGAGTTTTGCTGTATGTTTGTGGGTTAAAGGGCTTCAATCCCAGACTGCAGTATTCTCTAAACTCCCAAATCAACAGCTCTCGGCTCTTTTACATTACACAAGAAGCTCTGCTCATCGCTAAAACCAGCCAGCTGCACCCCGGACACAAATACTTCCTAGAGGTATGCCAGCAACACCGTTCATAAGCACTATGCTAATCATAATTTTTACAACTATTGCATATTTTTAACAACTGTGTTGCAGGTATTGGCCACTGACCTGGAGTCAGGAGATACTGTTAAAGCTACATTGCATGTGGAAGTTCTTCAAAGAGGCCAAACAGTCCCACAGGGCCCGTTGGGGGTAGGTTATCCATACAGTCGTGAGACAGTGGGCAGGGCAGAGGGTGTGGCAGGGGTGTGTCTGATCCTGCTGGCCATTACCTTATTTACTGTGGTGCGGTGCATCCGGATGAGCAGAGAGAAGCGGGATCACGTCATACGCAACACTGTGGCTGACAGCACACACCCTAATGTGAAACTGCGGTGGTTCCAGATGGTGAACCACAGCGCACCAATGCCTTTAATGGAGGACACATTTTCACGTCACAACGAGGCGTTCAGCGAATACGACTACTCCACTTCACCCTTCTACGGCAAACAGGGCATCTACACCAAAACAGAAGaaccaccaccatcatcatcatcatctgctgCAAACTTACCATCAATAACATTTAACAAATCCCTATTAAAAGAACCAAGACGCAATTATCTGGCGCTGCGGCCCAACGGGAGACCCGTGCACAGATTCAACAATAAAACAGTGTCATTTCAGGACTACGTCGTGGTTCGCGAATGTGACGAGGAGAGTGAAGAAACCACCACCTTCACAACCGAAGTAGAAGTCTGCTCGGATTTTGAGGAAATTAACATGGATTATGGATTAGAAAATGGCGATTCGGATGTCACCGAAGAACTTGAAATACAAAGTCCCACTTCATATTGTGACGATGCATCAGAAATGCTTAATACACAAGTCGACCAAGACTATGAAACTGCCATTGCAAATCAGACCGATTCTGAAGATATTCATGCAGATCCACCACAAAAAGTATCTGGAATACACAGAATTAAGTCTGACCTGGAGAAAATACACAGAGACTCGACTTTAACTCCAGAACGAGACCATTCGCCATCGCAAAAAACTCATTCAGAAGATGCTGCGTTCTCCAGTTTTAAAGGAGAGTCGCAAATAATAAACACTAAAGCCTTGGTTTCCTATAAACATTCAGAAAACGTTCAGTCAGATTGTGTCAGACAGTCTGACGATCTCACTGTAGATGCTGTGGTTTCAGGAGCTGAAAGTTCTGTGCAAAACACTCAAGATGCAAGTAACTTCACCGCTGATCTACAAACTCATGACTCCTATTACATTAACGAGGACATCGCAACTAATTTAGACGACAGCAGTCCAGGAGAGCAGTCCGGGTCTAGTTCAGATTCAAGCAGTCAACAACTGAACTATCTTCAGGTTCTTCAGTTTTTCGACAAACATCTTGACGATGATGGCGATTAA
>TCONS_00025181
GCAGCTCAGACGGATGACCCTCTGAAGTACGCAGTTGCCACAGTTCTGGTAAGGGTTCTTGCAGAAAacaagtttcccccacaattcagcCGCTCAGCATATCGTGGCTTCGTCAGCGAGAGCACAAGTCCGGCTTCACTCGTCATGACGTACGCCAACAAATTACTCATCCTGGAGGCCACAGATCAAGACTTTACCAACGGCTTCAATCCCAGACTGCAGTATTCTCTAAACTCCCAAATCAACAGCTCTCGGCTCTTTTACATTACACAAGAAGCTCTGCTCATCGCTAAAACCAGCCAGCTGCACCCCGGACACAAATACTTCCTAGAGGTATGCCAGCAACACCGTTCATAAGCACTATGCTAATCATAATTTTTACAACTATTGCATATTTTTAACAACTGTGTTGCAGGTATTGGCCACTGACCTGGAGTCAGGAGATACTGTTAAAGCTACATTGCATGTGGAAGTTCTTCAAAGAGGCCAAACAGTCCCACAGGGCCCGTTGGGGGTAGGTTATCCATACAGTCGTGAGACAGTGGGCAGGGCAGAGGGTGTGGCAGGGGTGTGTCTGATCCTGCTGGCCATTACCTTATTTACTGTGGTGCGGTGCATCCGGATGAGCAGAGAGAAGCGGGATCACGTCATACGCAACACTGTGGCTGACAGCACACACCCTAATGTGAAACTGCGGTGGTTCCAGATGGTGAACCACAGCGCACCAATGCCTTTAATGGAGGACACATTTTCACGTCACAACGAGGCGTTCAGCGAATACGACTACTCCACTTCACCCTTCTACGGCAAACAGGGCATCTACACCAAAACAGAAGaaccaccaccatcatcatcatcatctgctgCAAACTTACCATCAATAACATTTAACAAATCCCTATTAAAAGAACCAAGACGCAATTATCTGGCGCTGCGGCCCAACGGGAGACCCGTGCACAGATTCAACAATAAAACAGTGTCATTTCAGGACTACGTCGTGGTTCGCGAATGTGACGAGGAGAGTGAAGAAACCACCACCTTCACAACCGAAGTAGAAGTCTGCTCGGATTTTGAGGAAATTAACATGGATTATGGATTAGAAAATGGCGATTCGGATGTCACCGAAGAACTTGAAATACAAAGTCCCACTTCATATTGTGACGATGCATCAGAAATGCTTAATACACAAGTCGACCAAGACTATGAAACTGCCATTGCAAATCAGACCGATTCTGAAGATATTCATGCAGATCCACCACAAAAAGTATCTGGAATACACAGAATTAAGTCTGACCTGGAGAAAATACACAGAGACTCGACTTTAACTCCAGAACGAGACCATTCGCCATCGCAAAAAACTCATTCAGAAGATGCTGCGTTCTCCAGTTTTAAAGGAGAGTCGCAAATAATAAACACTAAAGCCTTGGTTTCCTATAAACATTCAGAAAACGTTCAGTCAGATTGTGTCAGACAGTCTGACGATCTCACTGTAGATGCTGTGGTTTCAGGAGCTGAAAGTTCTGTGCAAAACACTCAAGATGCAAGTAACTTCACCGCTGATCTACAAACTCATGACTCCTATTACATTAACGAGGACATCGCAACTAATTTAGACGACAGCAGTCCAGGAGAGCAGTCCGGGTCTAGTTCAGATTCAAGCAGTCAACAACTGAACTATCTTCAGGTTCTTCAGTTTTTCGACAAACATCTTGACGATGATGGCGATTAA

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0048511 rhythmic process biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007623 circadian rhythm biological_process
GO:0005501 retinoid binding molecular_function
GO:0019840 isoprenoid binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117755

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025180 False 1940 lncRNA 0.44 4 7000194 7012242
TCONS_00025181 True 1729 lncRNA 0.46 5 7000256 7012242

Neighbor

gene id symbol gene type direction distance location
XLOC_012582 CU467655.1 coding upstream 6069 6985876 ~ 6994125 (+)
XLOC_012581 NA coding upstream 63957 6934024 ~ 6936237 (+)
XLOC_012580 dnaja2b coding upstream 130838 6857071 ~ 6869356 (+)
XLOC_012579 NA coding upstream 214492 6780490 ~ 6785702 (+)
XLOC_012578 NA coding upstream 242748 6750054 ~ 6757446 (+)
XLOC_012584 si:dkey-88e18.2 coding downstream 60888 7073130 ~ 7088382 (+)
XLOC_012585 vwf coding downstream 137902 7150144 ~ 7228004 (+)
XLOC_012586 CABZ01015105.1 coding downstream 252719 7264961 ~ 7269671 (+)
XLOC_012587 ano2a coding downstream 271041 7283283 ~ 7304547 (+)
XLOC_012588 cers3b coding downstream 296908 7309150 ~ 7325818 (+)
XLOC_012573 CU928088.1 non-coding upstream 475304 6524776 ~ 6524890 (+)
XLOC_012592 NA non-coding downstream 426005 7438247 ~ 7440305 (+)
XLOC_012593 NA non-coding downstream 437006 7449248 ~ 7478152 (+)
XLOC_012597 CR318588.3 non-coding downstream 557087 7569329 ~ 7587421 (+)
XLOC_012598 NA non-coding downstream 563606 7575848 ~ 7581195 (+)
XLOC_012602 NA non-coding downstream 639508 7651750 ~ 7663657 (+)

Expression


Co-expression Network