CI01000304_12314575_12337592 (SYNJ1)


Basic Information

Item Value
gene id CI01000304_12314575_12337592
gene name SYNJ1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 12314316 ~ 12337690 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_12314575_12337592.mRNA
ATATTAAAAGCACAAACTGTTCAATCCTCTCAGTTTATTTTCTTCCTCTTATATCAATTGTTTATGACAGGATGCAGTAATAAAACACTTCAAATTGTGTGTTTTCGTGGTTGCATGATGCGACATTTGATGCACCTGCAGGCGGTTTGAGGGTTCGAATATGTTAACCACAACCCCTGTGGTATTTTCTTCATATGGTATGTTTTCAAAGTAAATGTTATTTTTTCTTATTCAGGACTGAAACCGGTTGTGTCGAGCCATGGCATTCAGTAAAGGTTATCGTATTTATCATAAACTGGATCCACCTCCATACAGTGTGATCGTGGAGACCAGAAATCGAGAGGAATGCCTGATGTTTGAGTCTGGAGCTGTTGCTGTACTGTCGGCGGCAGAGAAAGAGACCATCAAAACAGCATACACCAAGATGCTGGATGCTTATGGGATACTGGGAGTTCTTCGTCTTAACCTTGGAGATTCTATGCTGCACAGCCTGGTGGTCGTAACTGGCTGCAGTTCAGTTGGAAAAGTCCAGGATTCAGAAGTTTTTCGGGTAACAGGCACAGACTTCGTCTCTCTGAAGAATGACCCCTCGGATGAGGACCGGATCGCTGATGTCAGGAAAATCTTAAACTCTGGGAACTTCTATTTTGCCTGGTCCTCCACTGGAGTGAGTCTGGACCTCAGCTTGAACGCACACCGCAGGATCAGAGAAGACATATCAGACAATCGTTTTTTCTGGAATCAGTCCCTCCATCTCCATCTCAAGCATTATGGGGTGAATTGTGATGACTGGCTGCTGAGGTTAATGTGTGGTGGTGTGGAGATCCGCACCATCTATGCCGGGCACAAACAGGCAAAAGCTTGCGTGATCTCTCGTCTCAGCTCAGAGAGAGCAGGCACACGCTTCAATGTCAGAGGCACAAATGACGACGGCCAGGTGGCCAACTTTGTGGAGACAGAGCAGGTTATTTTCCTTGACGACAAAGTATCCTCCTTCATTCAAATCCGAGGGTCAATACCACTGTTCTGGGAGCAGCCAGGAATTCAGGTCGGATCCCACCGTGTGAAGCTGTCCCGTGGTTTTGAAGCAAACGCACCAGCCTTTGAGAGACACTTTAGTGCTCTGAGGAGGCTGTATGGCAAACAGGTGATCATCAACCTGCTGGGTATGAAGGAGGGTGAACACATGCTCAGTAAAGCATTCCAGAGTCACCTAAAAGCTTCGGAGCATGCAAACGCTGTGAGAATGTTGAACTTTGACTATCATCAGATGGTTAAAGGTGGGAAAACTGACAAGCTCAACAGTGTCCTGAAACCTCAGATCAACAAGTTTCTGGAGGAATGTGGTTTCTTCTATTACTCAGGGGAGGCCGGCATTCAGAGATGTCAAACTGGGACCATTCGTTCCAATTGTCTGGACTGCTTGGACCGAACAAACAGTGTCCAGGCCTTCATTGCACTTGAGATGCTTCCAAAACAGTTGGAAGACATGGGTCTGACGGAGAAGCCTCAGCTGGTGGCGCGCTTTCAGGAGGTCTTCCGCGCTATGTGGTCCACCAATGGAGACTCCGTCAGCAAAATCTACGCAGGCACTGGCGCTCTGGATGGCAAGGCTAAGGGTGGAAAGCTAAAAGACGGCGCTCGCTCTGTCACCAGAACCATTCAGAACAACTTCTTTGACAGCTCTAAACAGGAAGCCATTGACATCCTGAGACTGGGCAGCACCCTGAACAGTGACCTGGCAGATAAAGCACGAGCTCTTCTCACAACCAGCAGCCTGTATGCATCTCCCAGAGTGCTTCTTGGCATGTGTCAGAACCACTACAAGTACACACGACCCAAGAAGATCAGAGTGTGTGTGGGTACATGGAATGTGAACGGAGGCAAGCAATTCCGCAGCATTGCGTTTCGTAACCACACGCTTAATGACTGGCTCCTGGATGCCCCTAAGAAGGCCGGTCATCCAGAATTCCAGGATGGAAAATCCACCCCCGTGGACATCTTTGCTATTGGCTTTGAGGAAATGGTGGAGCTGAATGCTGGCAATATTGTCAGCGCAAGCACCACTAATCAGAAACTGTGGGCTGCAGAACTGCAGAAGAACCTCTCACGAGATCAAAGATACGTGCTGCTGGCCTCAGAGCAGCTGGTTGGTGTGTGTCTGTTCGTCTTCATACGCCCTCAGCATGCACCATTCATCAGGGATGTTGCTGTTGATACAGTGAAGACTGGAATGGGCGGGGCCACTGGTAATAAAGGTGGTGTGGCTATTCGCATGCTCTTCCACACAACTAGCATCTGCTTCGTGTGCTCACACTTTGCCGCTGGCCAATCACAGGTCAAAGAGAGGAACGACGACTATAATGAAATTGCACGCAAACTGTCCTTCCCTATGGTAATCATTTATGTAAAAATGTGTTACTTCTGCTCAGATTTCAACTACCGAATAAATATTCCTAATGAAGAGGTGAAGGAGCTGATCAAACAGCAGAATTGGGATGCCCTGATCACTGGAGATCAACTGGTGGAGCAGAAGAATGCTGGACAGGTTTTCAGAGGCTTTATTGAAGGGAAGCTGGATTTTGCCCCCACTTACAAATATGACCTGTTTTCGGAGGACTATGACACCAGTGAGAAGTGCCGCACGCCGGCCTGGACTGACCGTGTGCTGTGGAAGAGAAGAAAGTGGAACTTTGATAAAACTGCAGAAGAATTGGAGTTGAATGTAGTAGGAGCCCCAGTGAATGAGGAAGATCAGTACCCATGGAGCCCTGGAGAGCTCAAGTACTATGGTAGAGCAGAGCTCAAAACCTCTGATCACAGGCCTGTGGTGGCCATCATAGACGTGGACATACTTGAGGTGGATCCAGAGGCCAGACATCAGGTGTATAAGGACGTGATCGCCCTGCAGGGTCCACCTGATGGAACCATCCTCGTCTCTCTCTGCACTTCTGGTCCTGATGACTTCTTTGATGATGCTTTGATCGACGACCTGTTGGACAAGTTTGCTAATTTTGGCGAGGTGAATGGAAAGACCATAGACATCCGTCTGAGGAGTCCTGGTTGGATAAAGAGTCTAGAGGAAGAAATGAGTGTGGAGAGAATCTGCGGTAGCATCCCAACGTCCACCAGCTCCACCCTGCTTGCAGAAAACTCTGACATGGGGGAAGAGTATGATATGGAAGGTGATGTGGACGAGGAGGTTGAGGATATCTTACCCCAGCACCTGCAGCCTGGAGCGGGCATGGATCTAGGCTCGTCCCCCACCCCATCCCCACGCAGCAGCCCCTGCCCTTCTCCTACCCACGGAGAGCCTGCGCCCCCCATCCGACCCAGCAGAGCCCCCCCACGCACAGCTGGACCACCACAGGGTTCTCCGGTTGATGGTCAGCCAGCTGGAGCTCCTTCATCGCAGGGGCTAGAGCCAAAACGCCCCCCTCCTCCACGCCCCAATGCCCCACCAGCCCGACCTGCCCCTCCACAGCGCCCACCACCACCCTCAGGCTTTGCTGAGCCTCTCAATCTAGAGTTTGATCTGACTGATTATGAAGGTCGAGGTCAAGCAACTGGAACAGCCCCTGGAGGCGCCCCAAGGCCGATCCCACCTCGAGCAGGAGTTATCAGTGTCCCTCCTCAGGCTAGACCTCCTCCTCCTCCTGCTCACCCCGGGGCCCCCAGACCGATAGAAGTGCATCCTGGGGCCCCCCGACCTTCACTTGATAATCACCCCGGAGCACCAAGACCCACTCCTGAACCCCAAAGCAAGCCATCCGAGTTGCCTCTGGGTCCACCCCATGCTCTGCCAGGTCCCATGAGACCTCAGATGATATCACCCATGCAGCCTCAGTCTATGTCACCAGTGCAGCATCCTGTCCAAGCCCAGCTCCCTCCACCAATGCAGCCCACCTTCCCTGCCCCTCTGATGCCTCAGCCGGCCTCCCAAGTGTCTGCTGGAGTCGCTGCCACCCCTCAGCCCGGACTGGCATCTCCCAAGCCTCCACCCCGGAGCCGGTCCTCTCACACACTGCCACCTGAGTCTGCTCCTCCTCCTACAACCCAGTACCCCCAAGACCCTATCCTGGGGTCAGTAACCTGCTTTAGGGGCCTCTTCCTCTTTCTTTTTTACTTTTCTAGTAATAACGACTTTGTCCAGGTCAAGGATATGAATGGAGTCCAAAGAGAAGCACAATGGAAACTAGACCCCTTCGACATACTTAACAACCAGTCCCTCTTCCAGAATGCATCCAAATCCCAGGAGACCCTCCGTGCATCCCCCAATCCGTTCCTCGCAGACGCCCAACCCAGACCCAACAGCACCAACCCTTTCACCGGCAACCTGCTGTCCTCCCCTCGCCGATCACTCACACCCGATTTCTTCACCCAGCAGCAGGCCCAAGCAGCCACGCCTGGCCTGAACAGGGCCATGTCGACTGTGGTTCACAGTTCCACTCTTCCACCATCTTTCTCCAGACAACAATCCTTAGTTCCTGCTACAGCAGCAGCCCCAACCAAACAGACCCAAAAGTGGGTCACCTTTGATGACGATTCAGACTTCCTTTCAAGAAATGCTCCATCCGCAGTTAGGACCAGCTCGCCACTTATACCCGCAGCCTTATCCCTTCCCTTCCCACAACCCCAGAGCAGCTTCCCCAGCTCGGGCTTTGATTTCCTTTCAGCAAAGGCTCCATCTGCAGTTGGGACTGGCCCACCGCTTATACCCACAGCCTCATCCCTTTCCTTCCCACAACCCCAGAGCAGCTTCCCCAGCTCAGGCTTTGGCATGGACAGTAACTGGACGTCGCTTCCCACCTCTGCGTTCCCCACAATCCCCCCTCCAATCTCAACCAGGACTAATACCAGCATCAAAAACGCCCACATCCCTTCCAGAAACGAATTTACAGAGAGATGATACAGCGGAGAACATGTATGTAAAATATGGAGAAAATATTATTGTGTATCTATGGTTTGTATAAAAGTGAGGTGGTGGTATTGACCTCTTTGTCCGAA

Function

symbol description
synj1 Enables phosphatidylinositol phosphate 4-phosphatase activity and phosphatidylinositol phosphate 5-phosphatase activity. Acts upstream of or within several processes, including detection of visible light; retinal cone cell development; and vesicle cytoskeletal trafficking. Is expressed in brain; hair cell; inner ear; and retina. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 20; and developmental and epileptic encephalopathy 53. Orthologous to human SYNJ1 (synaptojanin 1).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K20279 SYNJ; synaptojanin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_12314575_12337592.mRNA True 5007 mRNA 0.52 29 12314316 12337690

Neighbor

gene id symbol gene type direction distance location
CI01000304_12213555_12231910 NA coding upstream 81584 12212054 ~ 12232732 (+)
CI01000304_12065676_12071391 TRIM47 coding upstream 242886 12064381 ~ 12071430 (+)
CI01000304_11993486_12061098 FREM2, FREM2A coding upstream 252098 11993486 ~ 12062218 (+)
CI01000304_11866424_11868022 UGT5D1 coding upstream 446233 11866100 ~ 11868083 (+)
CI01000304_11812792_11817948 NA coding upstream 495903 11812514 ~ 11818413 (+)
CI01000304_12340979_12347664 SLC9A6B coding downstream 2157 12339847 ~ 12347890 (+)
CI01000304_12353305_12359214 FHL1B coding downstream 15316 12353006 ~ 12359838 (+)
CI01000304_12362738_12374610 NA coding downstream 25048 12362738 ~ 12374610 (+)
CI01000304_12375591_12385064 HTATSF1 coding downstream 37901 12375591 ~ 12385120 (+)
CI01000304_12385473_12389970 NA coding downstream 47783 12385473 ~ 12390527 (+)
G425764 NA non-coding upstream 11590 12302340 ~ 12302726 (+)
G425765 NA non-coding upstream 13694 12300413 ~ 12300622 (+)
G425666 NA non-coding upstream 57122 12255099 ~ 12257194 (+)
G425660 NA non-coding upstream 140257 12172882 ~ 12174059 (+)
G425635 NA non-coding upstream 197950 12111311 ~ 12116366 (+)
G425777 NA non-coding downstream 117491 12455181 ~ 12455395 (+)
G425778 NA non-coding downstream 117803 12455493 ~ 12455853 (+)
G425796 NA non-coding downstream 223384 12561074 ~ 12561425 (+)
CI01000304_12583384_12588591 WDR74 non-coding downstream 251231 12583384 ~ 12589788 (+)
G425812 NA non-coding downstream 253566 12591256 ~ 12593865 (+)
CI01000304_10555326_10571933 NA other upstream 1758612 10555216 ~ 10572164 (+)
G424251 NA other upstream 2121421 10188822 ~ 10189404 (+)
G424246 NA other upstream 2186994 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 2748743 9561005 ~ 9565778 (+)
G423614 NA other upstream 3364894 8949036 ~ 8949422 (+)
G425718 NA other downstream 91015 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 1218761 13578049 ~ 13595097 (+)
G426312 NA other downstream 1992358 14330048 ~ 14330886 (+)
G426828 NA other downstream 2611200 14948890 ~ 14950592 (+)
G427860 NA other downstream 3547764 15885454 ~ 15889591 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016097 synj1 coding CM030122.1 CM030122.1 7061817 ~ 7097527 (-)