CI01000304_15859896_15879052 (TRIM37)


Basic Information

Item Value
gene id CI01000304_15859896_15879052
gene name TRIM37
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15859117 ~ 15879376 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_15859896_15879052.mRNA
TGCAGCATTTTGGCAGTTCATTCAATATTCTGTGTTTATTTCATTATATGTTTTGGCCATCTGCGGTCATAAACAGTAAAGCTCATACAGATGAATGTCTTCTGCCACTTGTCACATCAGCTCTGCGTTGCCATACATATTTATAGTAAATAGACTGTCTTTTTGTAGACTAGCAGACTGTGTGCATGATATTGCTAAATCATCAGTCTTCATTAATAAAATGTGAGCATCTAAATGGGCTCTGCTGTCTGTTTTTTACCTCAGTGAAAGCACCAGGATTCTCCCATCAGATATATTTGGCTGTCAGAAGTCAAACTGGCTGAGATGGATGAGCAGAGTGTTGAGAGTATTGCGGAAGTTTTCCGATGCTTCATTTGCATGGAAAAGCTGCGCGATGCCCGTCTATGCCCTCATTGTTCCAAACTCTGCTGTTTCAGCTGCATACGGCGATGGCTGACTGAACAGAGAGCTCAATGTCCCCACTGTCGAGCTCCGCTTCAGCTGAGGGAACTGGTCAACTGTCGCTGGGCAGAGGAAGTGACTCAACAACTGGACACACTGCAGCTCTGCAACCTCACAAAACATGAGGAGAACGACAAAGACAAGTGTGAGAACCATCATGAAAAGTTGAGCGTGTTCTGCTGGACTTGTAAGAAGTGCATCTGTCACCAGTGCGCTCTGTGGGGAGGCATGCATGGAGGTCATACGTTCAAACCCCTGGCCGAGATCTACGAGCAGCATGTGACGAAGGTGAACGAGGAGGTGGCTAAGCTGCGGCGCCGGCTAATGGAGCTCATTAGTCTGGTTCAAGAAGTGGAGAAGAACGTCGAGGCGGTGCGTGGTGCGAAGGATGAAAGGGTGAGGGAAATCCGGAATGCTGTGGAAATGATGATTGCTCGGCTCGATAATCAGCTCAAGAACAAACTCATCACGCTCATGGGACAGAAGACCTCTCTGACACAGGAAACAGAACTGCTGGAGTCTCTGCTGCAGGAAGTGGAACATCAGCTGCGTTCGTGCAGTAAGAGCGAGCTGATCTCTAAGAGTCCAGAGATCCTGCTCATGTTCCAGCAGGTTCACAGGAAACCAATGCAGTCTTTTGTCACCACTCCTGTCCCACCAGACTTCACCAGTGAGCTGGTCCCTGCCTATGACTCCAGCACTTTTGTTTTGGCAAACTTCAGTACTCTGCGGCAGAGAGCCGACCCCGTCTACAGCCCCCCGCTCCAGATATCAGGCCTGTGCTGGAGGTTGAAGGTTTATCCGGATGGCAATGGAGTTGTTCGGGGAAACTATCTCTCTGTTTTTCTGGAGTTGTCTGCAGGGCTTCCTGAGACGTCCAAATATGAATACAGGGTGGAGATGGTCCATCAGGCCTCCAGTGACCCCACTAAAAACATCATTCGAGAGTTTGCATCGGACTTTGAGGTGGGCGAGTGCTGGGGGTATAACAGGTTCTTCAGGTTGGACCTTCTCGCCAGTGAAGGATACTTGAATATGCAGACTGACACTCTTGTGCTCAGGTATCAAGTGCGATCACCTACATTTTTTCAGAAGTGCAGAGATCAGTATTGGTATATAACTCAGCTGGAGTCGGCCCAGTCCAGTTACATTCAGCAGATCAACAACCTAAAAGAGAGGTTGGCCATAGAACTGTTCCGTCGGCAAAAGTCGCGGAGTTCCTCTCCACCTGATCGGCGTCTCTGCCCCACGACTTCCTCTGGGAGAGACTCTCGTCAGGGGAAGAGCTCCGTACTGGAGGAAGGGAGTCAGGCAGCATCAGTAGGGACTAAGGAAGATGAGGATGAAGAGAAGACCCAGCATGATGACTCTAATGAGTTGTCTGACGGGGATCTGGAGGTGGACTGTCTAACTGGAGATGAAGATGTCAATCCTCTGGATGGAAGTAGCACCTCTGGGAGCTCAACAGCCACCAGTAACACAGAGGAGAATGACATTGACGAAGAGACCATGTCTGGTGAGAATGACGTGGAGTACAGCGGGAATCTAGACCTTGAGGAAGGTGAATTACCCGATGATGTTGCCGGGGCAACAGGAGATTCTGGTGCCTGTGCCCGGGGTTCAAGGCGTGGGGCAGGTGCAAGTTCAGCCAGCCTCCTGGAGATCGACCCGGTCATCCTCATCCAACTCTTGGACCTGAAGGACCGCAGCCATGTGGAGTCACTGTGGGGGATGCAGCCCCGCCCCCCTACCTCTCTCCTCCAGAGCCAAGCTGCTGCTGTGCCCTCTCGTAAAGAGCGTGAGCGTCGTCCTCAGGCGGTGCGTCGTTCAGCCCCGGACTCGGGGGTCCTGATCAGACTGAAGGCTCAGATGGCAGAAGTGCGCAGTAAGATGTCGGACGTGAAAGGGCAGCTGGAAGCTCGTGGTGGAGCCGGTCGAGTCTCCTCTCAGGGAGCCTCAAACCATGAGCAGGGCCCCTCCATGGACTCAGAGATGGGACCCAGCCGCAAACCCAGTGAACTGCTCTTCAAAGCGCCCATCTCATCACGACACTGTCGCAGTGGAGTGAAGAAGGCTGGTTCTCCTAAGCAGGAGAGTGTGGGGGCGCTGGGTGGACTGTCCCTGCGCCGGGGTGTGGATGCTGGGGAGAAAGAGCTGAGAGGAGCAGGGCGAGAGTCCCCTACTGAACCTGCTCTGTGTCCCAGAGAGGGACCCTCCTCCTTGGATGGCTCCCTGAAAGCACGGAGTGTGCAGAGTTCTCCTCCCTCGCTGGGAAGCAGCTCCTCTTCCTCTGATAAACCCTCCGGCTCTAAACACGAGGAACTGCTGTACGGAGCTTCAGCTTCAGACCTGTTCAGCATCACAGCTCTCAATGGAGCGGCTGCACCCGCCACCAAACAGCGCAGGACTCCAGCCATTGGACCTGGCCTGCTGACAGACAGCTCTCTGAACTGTGATCAAGAGAGTGCCGACGAGATCCATCAGTCACTGCTGTCACTGGCTGAGCCATCGTCCTCTTCCTCCTCACGCCCTGATGAAGGTCTCCTCAGTCAAAAACAGCCTCACCACGTGCTGCCGAGCATGAGCAGCGACAGCGAGCTGGACTGTGACACGGAGAATGAGAATGAGGATGAGGTTGTGGCTCTGGAGGCTGGAGACTGCGAGCAGCTGATCCCTGATGATCTGAGCTTTGTGTCCGGAGAGACCACAGAGAGGTGATCCGCCACAGTGCTACAGAAATGCCTTGAAGTCGTCAGGCTCTGAATGTGCTCTTTGCATTATGTCTGTGCACTTACTTTATGTTCAGATAGAACAGGAATATATCTGCTACTGTATACATTATTTAAGAGAAACACAACTTTCAGGATGGGAAAGAAAAGTGTTTTTTCCTCTCTGCATTGTGAAATGCGCAACATTCCGTTATAAAGCTTAGGTGTATATATTTAAATGTGCATACTAGATAATCATATTACAGTTATATACTACATTTCTTTATTTTTGCAATGCTGCTTATTGTCATAAATTCATAGGGAGTTGCCAAACACCACTTTTTTTTCCTTTGAGTCAATAACTGGGTTCAAGTGTTTTGGCACATTGAGTCAGAATGTCAATACAGGTGCTGCTCTGTTACCGATACATGTGGCTTTATTCTTTGTGCAGTGTGTGTGTGTATATATATATATATATATTAGTGAGGTTTTTTTTTTTTGTACCCCCACTGTAACTGTCTAGTCATCAAAGTATAGCTTTCTATACCCAAAACATGTTTACATTGACTAAATGTTTGCAAAAAGGGAACATGGAGCTGATACAAGTTCAAGTAATTTTCTGACTTTGACAGGGATGTAATTGTGTTTTTATATATTTCAAATAAGCAGTTATTACACAGCTCAGTTACAAGCACTTATGAACTTATTAACGCTACATTCCAATTTTTGCTTGTTTTTTTTTCTTTCCTTTTTTAACCCATGTTAACTCCTATAAGATGTCCAAATAAA

Function

symbol description
trim37 Predicted to enable tumor necrosis factor receptor binding activity; ubiquitin protein ligase activity; and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of centriole replication; protein ubiquitination; and regulation of DNA-binding transcription factor activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be active in aggresome and peroxisome. Human ortholog(s) of this gene implicated in mulibrey nanism. Orthologous to human TRIM37 (tripartite motif containing 37).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10608 TRIM37, MUL; tripartite motif-containing protein 37

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_15859896_15879052.mRNA True 3959 mRNA 0.49 24 15859117 15879376

Neighbor

gene id symbol gene type direction distance location
CI01000304_15794739_15795184 NA coding downstream 62900 15794480 ~ 15796217 (-)
CI01000304_15782838_15784193 ATG101, ATG101.L coding downstream 74924 15782727 ~ 15784193 (-)
CI01000304_15755554_15770449 NA coding downstream 88349 15754452 ~ 15770768 (-)
CI01000304_15715861_15722546 MOGAT2 coding downstream 136571 15715424 ~ 15722546 (-)
CI01000304_15703390_15711806 DGAT2 coding downstream 146998 15703172 ~ 15712119 (-)
CI01000304_15882316_15888812 RABGEF1 coding upstream 2306 15881682 ~ 15888812 (-)
CI01000304_15891065_15894363 KCTD7 coding upstream 11427 15890803 ~ 15894363 (-)
CI01000304_15903075_15957836 CUX1A coding upstream 23699 15903075 ~ 15957836 (-)
CI01000304_15986032_15996763 CUX1 coding upstream 106387 15985763 ~ 15996763 (-)
CI01000304_16032454_16034363 NA coding upstream 152616 16031992 ~ 16034452 (-)
G428411 NA non-coding downstream 52359 15800929 ~ 15806758 (-)
G428451 NA non-coding downstream 107574 15751343 ~ 15751543 (-)
G428450 NA non-coding downstream 108220 15749584 ~ 15750897 (-)
G428432 NA non-coding downstream 285084 15573732 ~ 15574033 (-)
G428405 NA non-coding upstream 160102 16039478 ~ 16042713 (-)
G428517 NA non-coding upstream 242822 16122198 ~ 16122496 (-)
G428519 NA non-coding upstream 250338 16129714 ~ 16130055 (-)
G428500 NA non-coding upstream 253263 16132639 ~ 16137401 (-)
G428521 NA non-coding upstream 266940 16146316 ~ 16153240 (-)
G427376 NA other downstream 597712 15258964 ~ 15261405 (-)
G427423 NA other downstream 1497225 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1571513 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1589546 14265476 ~ 14269571 (-)
G427309 NA other downstream 1650818 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 899988 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 975189 16854565 ~ 16860911 (-)
G429331 NA other upstream 2044487 17923863 ~ 17924684 (-)
G429499 NA other upstream 2358343 18237719 ~ 18238319 (-)
G429673 NA other upstream 2707066 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002872 trim37 coding NC_007121.7 CM002894.2 32809620 ~ 32851847 (-)