G428450


Basic Information

Item Value
gene id G428450
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 15749584 ~ 15750897 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491965
TGATTTGTTCATATTTATTAGACTTTCAAACAGTATGTTATACTATAAGGAAGCACTTAATGACATGATATTTGCTACTCTAAATGATCATCATCGCAACATTGTATGTTTTGAGAAAAAGCATGAAACAAAATACATTTATAGCACCATTTTAGTTGTCGCAAACAGTCTGGGAGCGCAAGTACTTTTTGTTCATGTTTTTCTCATTGGGAAGCTCATAATTTAGTCTTAATCTATAACATACAATATATACATACAGTACTTTAAATCCACATCTCTCTCTGTCTGCAAAAATATTTCCTAAAATATTTCTCATTACTTCAGTGTTCTGTCTATAGCTGCCTGCCTTCCTCTTAGTCATGTGCTTTGTGTCAGTACTTGACATCCGGAGCGAACCGGACTACTCCCCGACTCCGTGGTTCTGGTCGTTCCACCAGTGGTTCTCCTCCAGAGGTACCCGCGGAATAATAATCGCTGACTCGTCCGAGGCCAGACTCAGATTCACTAGGAAGCAGCACAGTGTTATTGCCAAAGGAGGAGCGGAAGGGCGACAGAGGGAGAGAAAGAAAGAGAGAGACACAGAGACACAACATGAGGTGTTTTATCTGGTAGATAGCATTGTGCATTAGAAGAAATGAGTCTTTGAGCATTCTGAGACCACTTTTTATTCATTATTTCTATTTATAGAGATTCTATTTGTAGCGAGACCGATGTAAGTGATAACAGATCAAGCAGATGTTTGAATGAGTAGAGAAATACATCTAATAGCCAATAACATATGCTAAAGATATTATTTACAGCCTTGAGTGCATTCCGTTTGGAATCTTGAATATAGCCGTGGCTAAAGGATCTTGTTTGGCACGACGCGCAACTGACTCGTTTAGCTGGGATTATATTCACAATACGGCACAACTTTGAGTGCCTTATTGCTTTCATTATGCGGTTGTTACATATTTGAATAATTAAGGATGAAAATGTTTATTAAAACTTATTTGTATTAAGCAAATTCATTAAGTGGAATCTGAAGATATAGTCCCCGATATAACAGAACGCTGCTATGAAACAAACACTTTACACTGTCAGTTTTTGGGATTGACAACCACATTTACTTACAGGTGTGGTCTCGAAATGTCTATTTCACACAGACTTACAGTAGCGTCTCGAATACTGTCTGTATGCAGGGTTGCCAGGTTTTCACAACAAAACCCGCCCAACTGCTACTCAAAACTAGCCCAATCATGTTTCAGGGGTATCCCCTGGTAAAAATTGCCAAGGGGGTAAAATCTGTGTTTTTTGGCGGGGTTCCCCTGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491965 True 1314 lncRNA 0.39 1 15749584 15750897

Neighbor

gene id symbol gene type direction distance location
CI01000304_15715861_15722546 MOGAT2 coding downstream 27038 15715424 ~ 15722546 (-)
CI01000304_15703390_15711806 DGAT2 coding downstream 37465 15703172 ~ 15712119 (-)
CI01000304_15584327_15694046 UVRAG coding downstream 55538 15584327 ~ 15694046 (-)
CI01000304_15341701_15346353 VPS26BL, V26BL, VPS26B, V26BB coding downstream 402406 15340565 ~ 15347178 (-)
CI01000304_15322368_15331609 FEZ1 coding downstream 417845 15321790 ~ 15331739 (-)
CI01000304_15755554_15770449 NA coding upstream 3579 15754452 ~ 15770768 (-)
CI01000304_15782838_15784193 ATG101, ATG101.L coding upstream 31830 15782727 ~ 15784193 (-)
CI01000304_15794739_15795184 NA coding upstream 43583 15794480 ~ 15796217 (-)
CI01000304_15859896_15879052 TRIM37 coding upstream 108220 15859117 ~ 15879376 (-)
CI01000304_15882316_15888812 RABGEF1 coding upstream 130785 15881682 ~ 15888812 (-)
G428432 NA non-coding downstream 175551 15573732 ~ 15574033 (-)
G428385 NA non-coding downstream 232894 15516463 ~ 15516690 (-)
G428382 NA non-coding downstream 238604 15504754 ~ 15510980 (-)
G428383 NA non-coding downstream 246072 15498415 ~ 15503512 (-)
G428379 NA non-coding downstream 259570 15489809 ~ 15490014 (-)
G428451 NA non-coding upstream 446 15751343 ~ 15751543 (-)
G428411 NA non-coding upstream 50032 15800929 ~ 15806758 (-)
G428405 NA non-coding upstream 288581 16039478 ~ 16042713 (-)
G428517 NA non-coding upstream 371301 16122198 ~ 16122496 (-)
G427376 NA other downstream 488179 15258964 ~ 15261405 (-)
G427423 NA other downstream 1387692 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 1461980 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 1480013 14265476 ~ 14269571 (-)
G427309 NA other downstream 1541285 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 1028467 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 1103668 16854565 ~ 16860911 (-)
G429331 NA other upstream 2172966 17923863 ~ 17924684 (-)
G429499 NA other upstream 2486822 18237719 ~ 18238319 (-)
G429673 NA other upstream 2835545 18586442 ~ 18591856 (-)

Expression


Co-expression Network