XLOC_012617 (CT025888.1)


Basic Information

Item Value
gene id XLOC_012617
gene name CT025888.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 9111816 ~ 9111932 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025249
GGCCACAGCCAAAtccccctgcagcccaagaccggttactcactgaagctaagcagggctgatcctggtcaatacctggatggTAGACCTCATGGGAAAACTttgttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000113541

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025249 True 117 rRNA 0.53 1 9111816 9111932

Neighbor

gene id symbol gene type direction distance location
XLOC_012616 ELAPOR2 coding upstream 156243 8917766 ~ 8955573 (+)
XLOC_012615 tmem243a coding upstream 195816 8912113 ~ 8916000 (+)
XLOC_012614 si:dkey-5i3.5 coding upstream 201881 8901846 ~ 8909935 (+)
XLOC_012613 CT025776.1 coding upstream 219019 8889888 ~ 8892797 (+)
XLOC_012612 impdh1a coding upstream 268998 8805575 ~ 8842818 (+)
XLOC_012618 sema3d coding downstream 59846 9171778 ~ 9238675 (+)
XLOC_012619 CU861648.1 coding downstream 112481 9224413 ~ 9224528 (+)
XLOC_012620 sema3ab coding downstream 211279 9323211 ~ 9439922 (+)
XLOC_012621 sema3e coding downstream 381788 9493720 ~ 9576778 (+)
XLOC_012622 BX649551.1 coding downstream 495984 9607916 ~ 9608042 (+)
XLOC_012610 BX248392.1 non-coding upstream 714491 8397209 ~ 8397325 (+)
XLOC_012606 CABZ01052527.1 non-coding upstream 1008620 8100905 ~ 8103196 (+)
XLOC_012605 CU138508.1 non-coding upstream 1113119 7998576 ~ 7998697 (+)
XLOC_012604 LO018377.2 non-coding upstream 1228923 7882779 ~ 7882893 (+)
XLOC_012625 CR762488.1 non-coding downstream 699088 9811020 ~ 9811152 (+)
XLOC_012626 CABZ01016692.1 non-coding downstream 868946 9980878 ~ 9983912 (+)
XLOC_012628 CABZ01016693.1 non-coding downstream 904576 10016508 ~ 10016626 (+)

Expression


Co-expression Network