CI01000304_17730196_17744401


Basic Information

Item Value
gene id CI01000304_17730196_17744401
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17730093 ~ 17744562 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17730196_17744401.mRNA
ATTTAAAAAGTATATTCTGCACTGCATTGCTCCGTCCCGCAGATGTGTTTGGGTTTCGCTGGTGAATTTTCAAGGGTTTTGTCCTGTATATCCACATCCAGACATGCAACCTCCTCCAAGAAAGGTAAAAGTCACACAAGAGGTGAAACACACTCACACTGAGCAGCTGAACAGACTCCAGCTCAAACACCAGACCGACTTGGACTTCCTGGAGGATCTGAGAAATGTTTGGGCCGTATGGAGGTCTTACTTGGAGGGTGTTATGAAGGTGAGCCAGTCTCGTATCAACGGATGCGAGAACTATAGGAGCCAGATCTCAGATCCTGTGAAGACGTTCAGAGCGCAGAAGGACCTGCAGCTGAAGAGGTGCTGCGAACAGCTGGCGAGAGCTCAGGCCGATCTGCAGGTCACGATCAGAGACCTGGAAAAGAGCAGGAAGGCCTACCAGGAGGCGGAACAAACAGCGCAGACTGTGAGAGAGAAAGCTGATATGGAGGCCAAGTCAAAGCTCAGCCTGTTTCAGTCACGCTCCAGTTTGAAGAGGGCGAGTGTGAAGCTGAAAGCAAAGAAGAACGAATGGAAGTGCAAAGCCACGCAAGCAAGGAATGATTACCTGCTCACACTGTCAGCCACTAACGCTCATCAGGACCGCTATTATGAGACAGATCTGATCAGCTGCATCACGGTTCTAGATGGCAGTTTCTACAATCACGTACAGAGTTTTCTCATTTCACTGTGTCAGACGGAGCTTGAGACGTCTCAAAGCATTCAGGACACTTTCCAGTGCCTGTTGGAGACGTCCAGTGGGGTGACACAGGATATCCACCAACAGATTTTCATTCAGGACAACTCAGTGTTTCAGAAAGCCGCCCCCTTCCAGTATCAGCCCTGTGAAAATGATTTGGTCAGGGAACTGTTGAAGGAGAGTGGCACGGCTGAAGAACACAGTCTGAATAAGGAAGCACGGAAATGGGCCACACGTGTGGCCAGAGAACACAAGAACATCATTCTCACGCAACGGACGGTGAAACTAAAGGCAGAGGTGCGTCTGAACCTCCTCAGAGACGTGGGTGTGGCTGTAGACGTCTGGCTGAAGAGTGCCATGAACCAAGTGATGGAGGAACTGGAGAATGAGAGATGGGCGGCCCTCAATACCCACGATGCGCCATTCTCTCACTCTGTAGATTTGGACAGAGAAGATGATGAGGACACAGAGACGTTAGACGACAGCAGTTCCAGCCCCTCCAGCACTCACAGGAATTACCCGCTCACCTGCTCTGTGCTGTACTCGTATCAGGCATCCCAGCCTGATGAGCTCACCATCCAGGAACAGGAAATACTGGAGCTTATTGATGATGGAGACATGGAGGACTGGGTTAAGGCAAGGAACCGAACAGGGCAGGTGGGATACGTGCCGGAGAAATACCTGCAGCTTCCGACCTCCAGCTCTCTACTGAGCATGATCCAGTCTCTCTCCAGCATTGACGCCCAATCACACACCTCCAGCACATCTACAGAACAAGAGCCAGAAATAGAGACTCTCACCCAGAGCAGCCAGAACAGTCATGCCAGCGCCATAAATCTGGCCAGGGCTCTGTATGCCTATGAGGCTCAGACAGAGGACGAGTTGTCCTTCCCCGAGGGAGCCGTAATTTGCATTCTCAGCAAACACAACCAGGAAGATGATGGCTTCTGGGAGGGCGAGTTCAATGGCGCAGTGGGCGTCTTTCCCGCAGTGTTAGTGGAGGATCTATGCGGACCGGAGGGTGCACAAACACACAAGAGCATGAACGTGCAGGTGTCTCTGTCAGTTCTGGATCAAGCGGCTTGTCCACCCACTGTGTTTCCATCCTGTAACAGTCCAGAGTCTGTCCCGCTGCCATCTTTGACCGGCACACTCAATTTAAATGGCTATCAAACCCCAGAACCCCCCAAAATCTTGAGCTACAGCCACGCCCACACCACATCACCCAGGTCCCCAGGAGAGGGCGGGTCAGGCACCCTGAGACCTGTACGAGCTGCTCCTCCTCCACCCAAACAGCAGGCGCAGGGCCAGGTGCAGAAGAGAGAAGAGGTGGAGATCACACTGGTGTGAGCACATTTGACAAAATTGACGCTACCATGTTTGAATGCACCATGTGAATTCGATTTTGTGTAGGGTGGATATTCAGGACCTTTTTAATGAAGATATGGATGCACAAGCTGACCATTATTTAATGTGGTCCCACACCACCTTCTTCAGTTTTTTTAGGGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17730196_17744401.mRNA True 2256 mRNA 0.51 17 17730093 17744562

Neighbor

gene id symbol gene type direction distance location
CI01000304_17712871_17719763 RAB6A.L, RAB6A, RAB41 coding upstream 9959 17712508 ~ 17720134 (+)
CI01000304_17698564_17703891 NA coding upstream 26058 17698467 ~ 17704096 (+)
CI01000304_17694317_17697897 UCP3 coding upstream 31855 17694193 ~ 17698238 (+)
CI01000304_17605385_17608254 ALOX5AP coding upstream 120858 17603489 ~ 17609235 (+)
CI01000304_17590355_17601161 NA coding upstream 128743 17590121 ~ 17601350 (+)
CI01000304_17903097_17911970 VEZF1, VEZF1A coding downstream 158535 17903097 ~ 17912215 (+)
CI01000304_17924131_17929679 CUEDC1A coding downstream 179206 17923768 ~ 17929679 (+)
CI01000304_17936617_17949044 NA coding downstream 192055 17936617 ~ 17949742 (+)
CI01000304_17954672_17977093 KSR1, KSR1A coding downstream 208555 17953117 ~ 17977761 (+)
CI01000304_17980209_18006985 NF1B, NF1 coding downstream 234923 17979485 ~ 18007006 (+)
G429067 NA non-coding upstream 41694 17685684 ~ 17688399 (+)
G429051 NA non-coding upstream 49805 17680024 ~ 17680288 (+)
G428972 NA non-coding upstream 144603 17584008 ~ 17585490 (+)
G429037 NA non-coding upstream 164893 17564547 ~ 17565200 (+)
G429094 NA non-coding downstream 83416 17827978 ~ 17828326 (+)
G429096 NA non-coding downstream 92684 17837246 ~ 17846459 (+)
G429104 NA non-coding downstream 111993 17856555 ~ 17860469 (+)
G429126 NA non-coding downstream 117532 17862094 ~ 17864035 (+)
CI01000304_18024120_18049383 NA non-coding downstream 276169 18022276 ~ 18049552 (+)
G429050 NA other upstream 45330 17682271 ~ 17684763 (+)
CI01000304_17315088_17315342 NA other upstream 414493 17315087 ~ 17315600 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other upstream 712899 17009769 ~ 17023882 (+)
CI01000304_16761621_16764983 EXOSC8 other upstream 968441 16761372 ~ 16765057 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002316 NA coding NC_007121.7 CM002894.2 36741502 ~ 36778514 (+)