CI01000304_16761621_16764983 (EXOSC8)


Basic Information

Item Value
gene id CI01000304_16761621_16764983
gene name EXOSC8
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16761372 ~ 16765057 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16761621_16764983.mRNA
TCACACAGAAACACCTACGCGGAAGTCGTCCTCACTAACCACATCATCATCAGCGGGCGAAGAAAGCGCAGCGCTGCAGAGCGGCCGATGAGAAACCGCACTAGCGCCCCACACTGGAGCGGAGGACGGAAAATTCACCTCTTTACGTCACTGCAGTTTTCACGTGGTGCTTCTAAACATCATGGCGGCTGGTTTCAAAACTGCAGAGCCTTTAGAATATCACAGAAGCTTTTTGTTCCAAATGTAGATCTGCCTCCACTGTGCTCATCTAAATTCAGACCCGGACCACCAGGAGAACAGGCTCAGGCGGCCAGCCAATTTATCGCAGATGTCATTGAGAGTTCAGATTTAATAAATATGGAGGAATTGTGCATTGAAAAAGCTAAGCTTTGTTGGGTGCTGTACTGTGATATTATGTGTTTGGATTACGATGGGAACTTACTTGATGCTTGCATCATAGTTTTGCTGGCAGCTTTAAAGAACGCCCAACTTCCTGAAGTCACTATAAACAAAGAGACAGATTTAGCAGAAGTTGACATCCAGAAGAAGAGACACTTGAAGATCAACCGGCACCCAGTCGGCTCATCGTTTGCAGTATTTGATGATTCTATCATCATCGTCGACCCCACGGCGGAAGAGGAAAGCTTGTCCACAGCATTAATGACTGTGGTAACAGATGAGAAGGATCGACTCTGTGCTGTCCACAAACCAGGTGGGACGTCGTTATCCGGTGAGAAACTACAACACTGCATCAATAGAGCCATAACGAGAAACAAAGAGATCAGCAAACTAGTGGACAAAGTCATTGGGAGCATGAAGACGACAAAATAAACACACACAGTCGTGACGTTTTTATCTAAAAGTTGTATTTTTCACTGTCAATATATACTTTCTTTTTTATCACA

Function

symbol description
exosc8 Acts upstream of or within axonogenesis; cerebellar Purkinje cell layer structural organization; and myelination. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in alar plate midbrain region; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human EXOSC8 (exosome component 8).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16761621_16764983.mRNA False 905 mRNA 0.45 8 16761621 16765057

Neighbor

gene id symbol gene type direction distance location
CI01000304_16743239_16743811 RFXAP coding upstream 17810 16742503 ~ 16743811 (+)
CI01000304_16740135_16740524 SERTM1 coding upstream 20626 16738846 ~ 16740995 (+)
CI01000304_16565077_16641637 NBEA, NBEAA coding upstream 119280 16565077 ~ 16642341 (+)
CI01000304_16505174_16506124 NA coding upstream 255487 16504764 ~ 16513625 (+)
CI01000304_16470293_16490666 STARD13, STARD13A coding upstream 269580 16470253 ~ 16492041 (+)
CI01000304_16830439_16835774 NSUN5 coding downstream 65382 16830439 ~ 16836287 (+)
CI01000304_16878271_16882011 NA coding downstream 113214 16878271 ~ 16882011 (+)
CI01000304_16881934_16886577 T120A, TMEM120A coding downstream 116877 16881934 ~ 16887522 (+)
CI01000304_16889868_16901389 PORA, POR coding downstream 124811 16889868 ~ 16902126 (+)
CI01000304_16914506_16925875 NA coding downstream 149449 16914506 ~ 16926126 (+)
G428188 NA non-coding upstream 29793 16731607 ~ 16731828 (+)
G428116 NA non-coding upstream 106682 16649892 ~ 16654939 (+)
G428099 NA non-coding upstream 205999 16475222 ~ 16555622 (+)
G428069 NA non-coding upstream 338672 16422747 ~ 16422949 (+)
G427866 NA non-coding upstream 541213 16220030 ~ 16220408 (+)
G428197 NA non-coding downstream 14306 16779363 ~ 16780995 (+)
G428201 NA non-coding downstream 27236 16792293 ~ 16792623 (+)
G428232 NA non-coding downstream 88493 16853550 ~ 16853767 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A non-coding downstream 255825 17009769 ~ 17023882 (+)
G428153 NA non-coding downstream 259000 17024057 ~ 17025288 (+)
G428017 NA other upstream 677907 16083230 ~ 16083714 (+)
G427860 NA other upstream 872030 15885454 ~ 15889591 (+)
G426828 NA other upstream 1811029 14948890 ~ 14950592 (+)
G426312 NA other upstream 2430735 14330048 ~ 14330886 (+)
CI01000304_17315088_17315342 NA other downstream 549781 17315087 ~ 17315600 (+)
G429050 NA other downstream 917214 17682271 ~ 17684763 (+)
CI01000304_17698564_17703891 NA other downstream 938253 17698467 ~ 17704096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location