CI01000304_16914506_16925875


Basic Information

Item Value
gene id CI01000304_16914506_16925875
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16914506 ~ 16926126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16914506_16925875.mRNA
TTCAGTAACAGAAAAACTCAGCCTGTTTGAAGCCATGGAGCTCACGTGCGATCAAAAAAATATTACAAAGAATGCACAATGCTATATTCTTCTGAAGCTGACAGCTCATCTTAATATTTGCTGCATTATAAATACTGTGATGGAGATGAACTCGAGCATCAGGGTCAGTGTGGTGTGTGTGCAGATGACATTACACAGATCTCAGCTGGACAATATGACAAATGCAATCAATCATTCGATCATGGTGTTATATGTAGTGCAGAACAACCACAGAACATCACATGCAACACCAACATGTTATTGTTCTTCACACTGCAATAGCTCAGATTATTACTATTACACTAACATTTCTTTGATTGGTGTAACGTCCAACATTACAAGCCAAATTCTTGATTTTTTGAAATACCCAGCATGCCAAAACATGTCGAGGCGCATTTGTAAAGTTATAGTTAAACTAGACACAGCCATGGACGTGTGTGATATTCGCACAGCTCTAGAGGCCATCTTAAAACCACAAAATGACTCTGTGATCTTTGACGGAGTTGTGAGCAGAGTGGCAATCTGCTATAATACTTCTTCGGATCCTTTACGACAAACTCTCATATGGCAGCCATCTTTGAGTACAAATTTCAGTTCTGAAGTCTTCTGTATGGAGTCAAACCGAGAAAACTTTAATGAATACTGCTCAGTGGGCAATACAGTCATTCCCCTAAATGACAGTTGTAATTTATCTACAACCCCAGTCCAAAACATCACCACAACTCTTCCATCTTTTACAAGTACCTCACTCTCAAACATAACCATCAACTCTACAGCCATACTGGTGTCGACTTCTGTGAATGTAACAACTTTACCTGCTAATGTAACAACCTCAGTGTCCTCGACCACATCAGGGACATTAGATGCTGATGAACTGTTGAAGTTGAGTGCAAATGCTTCATCTTTAAATGCTACTCAGGTGGACAAGCTTTTATCACAGCTAGAGTCACTTTTATCTGGGCCCAATGTCAGCCTGGCTGTGGCAAACACTTCCGTCAATATTGTCAACAACCTCCTTGATGTTCCTGTAGCTGTAATCACTCCTTTCTCAAACAGGGCCATTAAGGTTGTGGACACAGTGGGTCTTAAACTGGTTGTATCAGAGACGAGTCAGTCAGTACTTTCACAATCACTGGCTCTGGCAGTGAAGAAAGTTGATGGGGCCAACTTTCAGGAGACGTCCTTCTCCTTAGTGGAATCATCTAACCTGCAGATTCGAAGTAACCCCGGTAAGACTGAAGCCCTGTCCAGAGACATTGCGGTTAGGGTTGGGTCCACTCCTCTGGGTTCAGTCACCCTCCCAGCGTCCCTCACGCAGAACCTCACGGATGAACAGCAGCAGCTCGCATCCAGAGTCCAGTTCAACTTCTTCCAGAAGAGCACCTTCTTCCAGGACAAATCACTGGGAAGCCGTAAACTAAACAGCGGGATTTTGGGTAGCAGTGTGGCTAACCTGAGCATCTCAGGTCTACAGAAGGAAGTGCTGATAACCCTGCGAAACACAGAACCCATTCCGGCTAACTATGTAGCTTCCTGTGTATTCTGGGACTTTAGCTTTAATGGTGGCTCGGGCGGCTGGAATGCTGCTGGGTGCCGTGTGCTTAACTCTTCTGCTGAAGAAACGCAGTGCGCTTGCAATCACCTTACCAGCTTTGGTATTCTGCTAGACATTTCTAGGACTCCCATCCCTGAAGAGCATCTCAACATCCTGACATACATTACATACATCGGCTGTGGCATTTCGGCTATTTTCCTGTCTATCACCCTTCTCACTTATCTGGCCTTTGGTAAACTGCGCAAAGACATCCCGTCTAAGATCCTTATTCAGCTGTGTTTGGCCTTGCTGCTGCTCAACCTGGTGTTCCTATTGGACGCTTGGTTAGCTCTGTACCCAGATGCCGTGGGTCTTTGCATCTCCACTGCTTTTTTCCTGCACTACTTCCTTCTGGCGTCTTTTACCTGGATGGCACTGGAGGCCGTCCACATGTACCTGGCCATCGTGAAGGTGTTCAACACCTACATCTCCCGCTTTATGGTGAAGATCGGATTTGCTGGTTGGGGCATTCCTCTCATCGTAGTCATAATCGTCATAGCCATTAACAAAGACAACTATGGCCTTGTGACATATGGGAGTTGCTGGATAAAAAACGACATTGCTTTCTATGTTGCCGTGGTGGCGTACTTCTGTCTCGTCTTCCTGCTGAACTTCGCCATGTTTATTGTGGTGATGATCCAGCTGTGCCGCATTAAGAAACAGAACCCTCACAACGCGCAGAATCGCAGCGGCTGGCACGAGGTGCGCAGTGTAGCTGGACTCACCATGCTTCTGGGCCTCACCTGGGGCTTCGCTTTCTTCGCCTGGGGTCCTGTTAACCTGGCCTTCATGTACCTGTTTGCCATTTTTAACACTTTACAAGGATTCTTCATCTTTGTGTTCCATTGTGCAATGAAAGAGAACGTCAGACGACAATGGAGGACATACCTGTGTTGTGGCAGACTGAGACTGTCAGAAAACTCAGAATGGAGTCGCACAGCAACTCAGAAGATAAACAAAGCCTCCAAGGAAAAGACGTCTTCATTCCATTCATCAAATTCGAACAATTCTAGCTTATCTTTCCTGAACCATGACAGATTGGCTGAAACGCAAAGGGGCATCGGCAACCCGATGGATGACAGGATAATAACTGCAGCAGAAGAGCCCGTCTCAGGTTCTGACGTGGTAATGAATGAGATCAATGACCAGTACTGGGGTCAAAGGTCATACTGAATGAACTAACCACAGCCGGTGTGAGTGTGTGTGCATGTATGTGTGTCATAAGGTCCAATGAGACACTGTATTTCACTTATCTTTTAAGTTTACGTAAAGTATTGTGTGTTGAATGTACAACAGAAAAGATATATATTACTTCAGATTAAGCACTTTAATCAATGCTATTAATTAATGAAGCTACCACCACAAACCTTTTAAACCAACAAAAATGGTTTAGGGTGAGGAGTTCAGTAGAATTGTGTATGAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16914506_16925875.mRNA True 3057 mRNA 0.45 23 16914506 16926126

Neighbor

gene id symbol gene type direction distance location
CI01000304_16889868_16901389 PORA, POR coding upstream 12380 16889868 ~ 16902126 (+)
CI01000304_16881934_16886577 T120A, TMEM120A coding upstream 26984 16881934 ~ 16887522 (+)
CI01000304_16878271_16882011 NA coding upstream 32495 16878271 ~ 16882011 (+)
CI01000304_16830439_16835774 NSUN5 coding upstream 78219 16830439 ~ 16836287 (+)
CI01000304_16761621_16764983 EXOSC8 coding upstream 149449 16761372 ~ 16765057 (+)
CI01000304_16954628_16965188 NA coding downstream 28502 16954628 ~ 16965600 (+)
CI01000304_16969702_16974059 NA coding downstream 43576 16969702 ~ 16974429 (+)
CI01000304_16975753_16997470 PHLDB2A coding downstream 49128 16975254 ~ 16997486 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A coding downstream 83643 17009769 ~ 17023882 (+)
CI01000304_17054994_17056008 NA coding downstream 128723 17054849 ~ 17059151 (+)
G428232 NA non-coding upstream 60739 16853550 ~ 16853767 (+)
G428201 NA non-coding upstream 121883 16792293 ~ 16792623 (+)
G428197 NA non-coding upstream 133511 16779363 ~ 16780995 (+)
G428188 NA non-coding upstream 182678 16731607 ~ 16731828 (+)
G428116 NA non-coding upstream 259567 16649892 ~ 16654939 (+)
G428153 NA non-coding downstream 97931 17024057 ~ 17025288 (+)
G428255 NA non-coding downstream 116077 17042203 ~ 17042429 (+)
G428260 NA non-coding downstream 121906 17048032 ~ 17049987 (+)
G428262 NA non-coding downstream 124269 17050395 ~ 17050678 (+)
CI01000304_16505174_16506124 NA other upstream 373461 16504764 ~ 16513625 (+)
G428017 NA other upstream 830792 16083230 ~ 16083714 (+)
G427860 NA other upstream 1024915 15885454 ~ 15889591 (+)
G426828 NA other upstream 1963914 14948890 ~ 14950592 (+)
CI01000304_17315088_17315342 NA other downstream 388712 17315087 ~ 17315600 (+)
G429050 NA other downstream 756145 17682271 ~ 17684763 (+)
CI01000304_17698564_17703891 NA other downstream 777184 17698467 ~ 17704096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location