CI01000304_16954628_16965188


Basic Information

Item Value
gene id CI01000304_16954628_16965188
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16954628 ~ 16965600 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16954628_16965188.mRNA
AGGTTCGTGTGACCTGCATCTTCTCTGAGGACTGTATTCTTCCCTGCTCTTTCACACCCAATGGTGATGTGAACATTAAGTGGTACCAGCAGGATGCGCTCATACTCAGTTTACAGCCGGCTGAACAGAGACTCAGCAATGACAGCGTGCGGCTGTTCAGCGACAACATCTCTGAAGGAAATGCATCACTTCTTGTGAAACAAGTAGATACAAGGAGTAAAGGACGTTACAAATGTGTGGTCAACAATGTGACTCAGACATATGTTCTTGCAACAGTGGAAGCTCCCATCAGGATGATCTCCATTGACACCGATCCCTCTGGGCTGATTCGGTGCTCTACTAAAGACGTCTACCCAGCTCCGGTGTTGCAGTGGAGCACAGCGCCCAGTTCACCTCCTGCTGCACTGCAGCCCACCACCCGTATGGCTTCTGTCGGAAAGGGACTCTTCACAGTGGAGAGCCTCCTAAAACAGCAGAACAACAGCCTTGATCATATATATGTGTGTAACATCACCTCCAAATATGGCAAGCAGACATGGACAGCTTCATTAAAGCTGCAAGAAATTACCAGCTCTGAAGGGCAAGACCTGATTATTCCATGTAGAGCTCCCAAGAACCTTCAGTCCTTCTCTCTCGTCTGGACTTTTACAACAGTAAACAAAACCACAGATGTCCTCGAGTATGACAGCAAGACCCATAAATTCAGCCGCTCCTGGGATCATGCAGAACTAGAAAAGGACAACATATTGAAAGGGGATCTTTCACTAAACCTGCAGAAACCTGTTGGCTCAGAACATTCTGGAATCTACACATGTGCCTTCTCAGCAGCAAAGGCGCGGCATCTGATCCAGACCCGTGTTGTTATTACATCCTCCAGGCAGGAGAAAGGTTTTCTTAAATATAATCTGTGGATGTTGGGTATCGTCGCAGGATTGATCACTCTTCTCGCAATCACTTTGGTTATAAAAAGATACAGAGATGCACACGTAACGTGTCTGTTCTTCGAAGACTGCGTGCTACCCTGCAGTTTCAAGCCCACAGGAGCTGTGGTCATCCACTGGTACAAGCAGCAAATCCCCGTCCACAGCTACTACTACTATAAAGACCAGTACGGGCTCCAGAACAAGCATTTCAGTGGCCGGACGAACCTATTTAATTCCCAAATCGCACAGGGAAATGCCTCTCTGGTGCTGAGGAAAGTTAAAGTCCAGGATCAAGGGAGGTATAAGTGCTACACCAGCACCAGGAAGGGAAACCAGGAAACCTTTGTTAACCTGGGGGTGAAAGCTCTGATCCAGTTTGTGAAGCTTGAGATGGTTGAGGAAAGGGTCACATGTCTGTCCCAGAACATCTATCCAGCTCCTGAGGTCACCTGGGCCACTGATCCCCCTAGTGACACCAGAAACCTCCAGAACTTCACTCGTAAAACCCCGGACTCCAAGGGCCTGTTCACAGTCGAGAGCACCATCAGCGTGAAGGGCAACATCTCTGACCACACTTACTTCTGCTCTGTTGTCTCAACGGATGGAACGCAGGTGTGGACTGCATCACTGCATCACCAAGATGAGTTATTTGGTGAGGAGGGCTCTGGACTTATGATTCCCTGCATGATACCACAACCTCGCCACAATTTTACCCTCACTTGGACCTTCATCAGAACCACAGAAACCATCGTCATCTTCACTTATGACAGCCGGACCCGTCGGATCATGAACCTGTGGGAAAGTAAAGCTGAACTCGACATAGATCAGGCTCACTTAGGCAACGGTTCCCTTCATCTGCTGAACCCAGACAGCTTGGGACACAGCGGAACCTACATCTGCACATTCTACGGCTTCCAAATGAGACATCAAGTCCAAACCCACGTCAATGTTACAGTTCGCGTGACTGATGATGATGAGTACGACTGCAGGAGGTCATGGTGGGGAACCGCTGTGTCTGTCTTCATATTTCTCATCACTGTATCTGTAGCTCTGTCACGATGTTTTAGACTGAGAGAGGTTCGTGTGACCTGCATCTTCTCTGAGGACTGTATTCTTCCCTGCTCTTTCACACCCAATGGTGATGTGAACATTAAGTGGTACCAGCAGGATGCGCTCATACTCAGTTTACAGCCGGCTGAACAGAGACTCAGCAATGACAGCGTGCGGCTGTTCAGCGACAACATCTCTGAAGGAAATGCATCACTTCTTGTGAAACAAGTAGATACAAGGAGTAAAGGACGTTACAAATGTGTGGTCAACAATGTGACTCAGACATATGTTCTTGCAACAGTGGAAGGTGAACGTCCAGTACACGGCCATTCAGACATCAATAAACGAATCAGAAGTGGCAACAAAACTGAAATCCCTCTATTTGAAAGACAAAGACAAGATGAAGCCGGCCGCAATGGTTTGGAATCAGTGGAGACAGAAATTCACAGAGTGCCGTGCAGCACAACACCTTTTATAGCAACCAAGTCATTTAAACAAGATCCTGACGGCCTTAATAATGACGTCCTGCCACATATACAAACAGAGAGCAGTATGATAAATACATGCATGATTATTAGTGATTCCTCTACATCTGACACACCAGAGGAAAGACGTGAATCCAGGCCACAAACTCCAACAGGTGCTTTAATAACTCTGTTCACATCTGAGATGAATACAGATGCATCTGATGATAAAGAAAATGAGAGAAATGGACTTGAATCACACTCAGCAGATGGAGTAGAGATGGAAAGTACAATGACTCAGAGATTTACCACACCTGAGCTCTCACAGATTAATGGCTTCAGGTGATTGATAGTAATTTGATTTATTGAAATGGTGCTGACTATTTATAATAACTAGATTTCTGAGCTCACTTCTGGAATGCATGACCTATAGTAAATAATAATGTGTAATTACTTTGAGCAAAATCCAACCATACAAACCACCCAGCTGAACCTTCAATATTTTAAACTGAATTAATAAAATAAATTTTAATATAAAAGTGTTTTATTATTATAAGTCTTGCGCATTATATAAAGTTACGTCTTTAAACCTGTATACAATCCTCACAGACCTTTTAATCATAGTTTAGATAAACCTTATGAAATTAACCATTTTCATTTTTTTTAATTTGTTTTATTTGTTGTTTATTTATTTCATACTTTGATATAGAAAGTGGCAATGTGAACAGACTGTGTGACTTGTGTGAAATAGTATATAA

Function

NR:

description
immune costimulatory protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16954628_16965188.mRNA True 3195 mRNA 0.44 11 16954628 16965600

Neighbor

gene id symbol gene type direction distance location
CI01000304_16914506_16925875 NA coding upstream 28502 16914506 ~ 16926126 (+)
CI01000304_16889868_16901389 PORA, POR coding upstream 52502 16889868 ~ 16902126 (+)
CI01000304_16881934_16886577 T120A, TMEM120A coding upstream 67106 16881934 ~ 16887522 (+)
CI01000304_16878271_16882011 NA coding upstream 72617 16878271 ~ 16882011 (+)
CI01000304_16830439_16835774 NSUN5 coding upstream 118341 16830439 ~ 16836287 (+)
CI01000304_16969702_16974059 NA coding downstream 4102 16969702 ~ 16974429 (+)
CI01000304_16975753_16997470 PHLDB2A coding downstream 9654 16975254 ~ 16997486 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A coding downstream 44169 17009769 ~ 17023882 (+)
CI01000304_17054994_17056008 NA coding downstream 89249 17054849 ~ 17059151 (+)
CI01000304_17210568_17214463 NA coding downstream 244968 17210568 ~ 17214638 (+)
G428232 NA non-coding upstream 100861 16853550 ~ 16853767 (+)
G428201 NA non-coding upstream 162005 16792293 ~ 16792623 (+)
G428197 NA non-coding upstream 173633 16779363 ~ 16780995 (+)
G428188 NA non-coding upstream 222800 16731607 ~ 16731828 (+)
G428116 NA non-coding upstream 299689 16649892 ~ 16654939 (+)
G428153 NA non-coding downstream 58457 17024057 ~ 17025288 (+)
G428255 NA non-coding downstream 76603 17042203 ~ 17042429 (+)
G428260 NA non-coding downstream 82432 17048032 ~ 17049987 (+)
G428262 NA non-coding downstream 84795 17050395 ~ 17050678 (+)
CI01000304_16761621_16764983 EXOSC8 other upstream 192976 16761372 ~ 16765057 (+)
CI01000304_16505174_16506124 NA other upstream 413583 16504764 ~ 16513625 (+)
G428017 NA other upstream 870914 16083230 ~ 16083714 (+)
G427860 NA other upstream 1065037 15885454 ~ 15889591 (+)
G426828 NA other upstream 2004036 14948890 ~ 14950592 (+)
CI01000304_17315088_17315342 NA other downstream 349238 17315087 ~ 17315600 (+)
G429050 NA other downstream 716671 17682271 ~ 17684763 (+)
CI01000304_17698564_17703891 NA other downstream 737710 17698467 ~ 17704096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location