CI01000304_16470293_16490666 (STARD13, STARD13A)


Basic Information

Item Value
gene id CI01000304_16470293_16490666
gene name STARD13, STARD13A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16470253 ~ 16492041 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16470293_16490666.mRNA
TTATATAATCAGACATCTTGCCTGCTCAATCAAAACAAGAATGCCTTTGATTGTGCCCCGCGCCCTGTGGCATCCAGGCTCTGTGTGGCATCCGTGCCTGCTGCTCTCTCTCATGGCGTTCTGCCTGTTGTCACGTCGAGGTGATCAGGAATGCCTGGGTCACAAGGGGCTGCGTGTCCTGGCTGCTGGGATTAGATGCCATAGCAGCGTAACACTATGCAGAGAAATCGAGGCAAAGGAAGCATGTGACTGGCTGAGGGCGGCGGGATTCCCACAGTATGCCCAACTTTATGAGGATTCCCAGTTTCCCATTGAAATATCCGCAGTCAAGAAGGACCATGACTTTCTCGACAAAGACCTTGTGGAGCCTCTTTGCCGTCGACTCAACACTCTGAACAAGTGTGCCTCCATGAAACTGGACGTGAGCCTCCCCAAGAAGAAAAGTGAGGACTCTGATGAGGAGGATCTGCTGGCCATCAGCAATAGATGGACATTTGAGTGGAACAGCCGGCGCTGGTCACGTCTGCAAGACATCGATTACCTCTTGGGTAGAGCGGAGGAGCGGAGCCCCTCGGAGGTGGGTGAGAATCTGCGGACCACCGTGAGCAGTGAGAGCATTCTGACAGACCTCAGTGAGCCGGAGATCTGCTCCCTCCACAGTGAAGACTCCTTGGCTGCCATGCCTGACTCCGCCTCGCTCACCCCACTGCACTTACCCAGAGAGCTGCCTCATTACGGTTCACTTCCTGCCAAGAGCAGGCGACGTGGACGCACACGCGCCAAAGACTTCTTGAGGAGGATGGAGACGCTGGGTCGGACATGGGGGCCATCAATGGGTCGTTCAGAGCGACGCTCTTTGGTTATTAGCGGCCCAGTTCTGCAAAGCGAGCCAGAGGCGCTAAAGACTCTACGATGTGTTCAGATTTTTAACGACGGGCCTCTAAACTCTGAAAACATGCCACCTGCCAACAACTGCCCAAATTCGTTGGCCAGCAGTGAGGCCAGCAGCCAATCTGAGACCAGCGGTAGTGCCGGAAGCACACCGAACATGAAGGGACGTGTCTCAAAGTTGTATCCTCCTGGTAAACGTGCAGGCATCTACCTGGAGGACATTGATGTTCTCGCCGGCGCCCCCCAGAGGAGGAGACCGGTTGAACAGAGCCGAAAAAATGATTTCCGCTCCTATGACGAGCTGTTGGTGCATATCCCAAAAGATCACAAACCTGGTACCTTCCCTAAAGCGCTGTCAATCGAGAGTCTGGCGCCAGCCAGTAAGGAACAAAGAAACTGGAAGGTTCTGGATTCAGAGACACAGCCATATAAGTGCAGGAAAGTTGGCGGAAGGGAACTCCGGGCCGTGACGCGCTGCTGCCCGCGGGGAAGCAGGATTAGCGTGTACGATAACGTACCTGGCTCACACCTGTATGCGAGCACAGGGGACTTATTAGACCTTGAGAAGGAGGATATTTTCCCACATTTAGATGACATATTGCAGCATGTGAATGGCTTGCAGCAGATCGTGGACCATTGGTCCAAAAACATCTTGCCGGAGAGTGAAGGGGAGGGGGAGGGCAGCAGGGGGCGGGACCAGAGGATTATTGATGGCCAATCTTCCAGTCAGATCACACTGGACTTTGAGGGGACCTCTGTAGAAGGCCTGACCACTCCGAGCGACGGCAACAAGGACGGGGTTTCGTTAAATGACACGGACACCTCCAGCACCAGAGAGAGGAGAGACTCGGGGGTGGGAGCTTCTCTCACACGACCACACCTTAGATGGCCGAGCTTCAGGATGTCAAACCTCCTCAGCCAATCAGGAATCTCACTACAGATATCTAGCCAATCAGTGGGCCAGCTTAGCTTGCTGCAGAAATTCTCTTTATTGCGTCTCACTGCAGTCATGGAAAAATACTCCATGTCCAACAAGCATGGGTGGACTTGGTCAGTGCCAAAATTTATGAAGAGAATGAAGGGACCAGACTACAAGGATAAGGTGGTTTTCGGCGTTCCTCTGATTGTCCATGTCCAGCGGTATGGATACCCTCTGCCCTTAAGCTTACAGCTTGCCCTGCGCTTTTTAAGGAGCCAGTGTTTGGACCAGGTGGGACTTTTCCGTAAATCTGGAGTGAAGTCTCGTATTCAGGCTCTCAGGCAAATGTGTGAAACCTCCCCAGAAAATGTGAACTACGAGGATCAGTCCGCGTATGACGTGGCGGACATGGTCAAACAGTTCTTCAGAGACCTGCCTGAGCCTCTCCTCACAAGCAAAATGGGCGAGACCTTCCTCCACATATACCAGTATGTCCCTAAAGAACAACGCTTACAGGCTGTGCAGGCAGCTATCATGCTGATGGCCGATGAAAACCGTGAGGTCCTGCAGACGCTGCTGTGCTTCCTAAATGATGTCACTTCCTCTGTTGAGGAGAACCAGATGACCCCCATGAACCTGGCAGTGTGCCTCGCTCCTTCGCTCTTCCACCTCAACATCATGAAGAATGATAACCTGTCGCCTAGGTCTATTCAGAGGAAGTATGCCACTGGGAGGCCAGACCAAAAGGACCTGAATGAGAACCTTGCGGCTACTCAGGGGCTTGCGCACATGATTGCTGAATGCAATCAGCTATTTGAGATTCCTCAGGAGATGTTCTCTCAGTCCAGGAACTCGTACATGGAAGCTGAGCTGCTGGCGCCCTCTTTGGATGAACTCTGTAAAAAACAGTCGCAACAGGATGAGGAAGAGGAAGAAGAGGAGGAAAGCACATATCGCTCTTATCTGGAGAGCCTGATACAGAATTTGACGAAAGAGGCCAAAGACAAAACCAAGGGCTGGGTGGCCAGATCAAACATTGACAATACTGAGCTATCATTCAAAAAGGTGGGAGACGGGACCCCGTTGAGACGCTGGCGTGTGTCTGCAGAGGTGGAAGCTCCTCCATCGGTGGTGCTGAACCGTATACTGCGAGAGCGCCACCTGTGGGACGGTAACCTGCTACAGTGGAAGGTTCTAGAAACTCTGGACAAGCAGACAGAGGTGTATCAGTATGAGTTGAACAGCATGGCCCCTCACCCCAACAGAGACTTTGTGGTGCTCAGGACGTGGAGGACAGATATGCCAAAAGGGGTGTGTGCACTGGTGTCGGTGTCGATCGACCATGAGGAAAGCCCACAGCTAGCTGGAGTGAGAGGGGTAGTTCTGGAATCACAGTATCTGCTAGAACCATGTGGCTCTGGCAAGTCCAGACTCACACATATATGCAGAGTTGATCTGAAAGGAAAGTCTCCAGAGTGGTACAACAAAGCTTTTGGCCATCTCTGTGCTAGCGAGGTCGCTCGCATCCGCAACTCCTTCCAGGCTTTGGATCCTGAGGGCCCAGAGACCAAAATCTGAGCAGGGCTTTGTGGAGTTAGACATGAGGGAACTGGGATGTAGTTCACAGGGCAGATGGTCATAGAGAACGAACTTGGAGAGATTCACGACAGAAGATGAGCAAATGGAAGAGTTTTTTTGTGTTTCTAGCCCCTAAACAACAACAAACTGCCATGTCCTGTTGGTTTAATAGACTGTGGATCATTGGGATTCGTTTTAGAGTGTTTTACCCCTTATAGGGCATTTAATTTAGTCTGTTTATTTCATATGAATTTATGCAGCTGTTCAAAACTGCCACTTTGAAATGGCATTTGTTGTGTGTTTTGGGGCAGGTGATTAGAAAAGATGGACAGAGAAAGTCAAAAGACAGACTCCAGCGTAACCATGAAGCCATGCCTGTTAAAAAAAAAAAAAAAAAAGTCATAACGCCACTTCCTGTTGTCCAGTCTTTACCACAGCAGACAGCTTTAACTAGCACCTTCAGAGCTTCGCTTACAACAAACAGATGTGGATGACAAGCCACCTCATGCTAATCAAAACACAGCAGGTCTGGTTTAGTTTTACCAAGCACTTCAACCTAAAGTACTGCATTCTCAAACAAATTTAGGTACGTTATTGTCTAAACATTATTTAAACTCTGTATTTAGGTGTTTTATCCTCATTTGAATGAAGCTAGTGTTACAGTGACTATATTTTTAAACTAAGATTGTATCCTGGTGACGTATTGATGTGAAGTATTTACTGACAAGTCCATATTGTTTCTAAGTTCTGTTTTAAGAAATATGTTGTTTATCATTATAATAGTCCTTGATTTCATTCGCAGGTAAGCAATAATGTATTATCACGATAAATGCACCAGTACTGTGTTCTTCTGACAATGCAATATGATTTAAGATTAAAAATCAAACAAAGTTGTAAATAATATAGGCAATGCTAATGATTGTTGCAAATATGCATCATTATTATTATTATTATTATTATTATTATTATTATTGCTGTCATTGTTATATGTTGCTGTGTCACACTCTACAATGTCTAGGACATGAATTCATTTCACTGCTTCTGAGAAGCATGTCTATTCTATTCACAAAGCTGTACATTTGTGTGTTTGTGTATAAATGTGTAGATACAATTCCGGTTGTATATTTTGTACAAAAATGAGGCTTATTGGCAGGTTTATCTGCTTTTATGCTCAGTTAATTTCCTCCTCATATCAATATTTTGCTTGAAATATCATTGCAAGCTGGTTTAATCCGCTGGCTTGTTCAGTGCTGTTGGGAACTGTGGGGTTGACTTGAGCTCAATGGCAGGAGGAAGGCAATATGTTGTGGCTCCAAAAGTAGTTTTTGAACAGTAACAGGGTGATTGAAGTTCCAGTCATTTGGAAATGTGAAAA

Function

symbol description
stard13a Predicted to enable GTPase activator activity. Predicted to be involved in actin cytoskeleton organization and regulation of Rho protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Orthologous to human STARD13 (StAR related lipid transfer domain containing 13).
stard13 Predicted to enable GTPase activator activity. Acts upstream of or within endothelial cell migration; endothelial tube lumen extension; and negative regulation of cell migration involved in sprouting angiogenesis. Predicted to be located in cytosol.

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K20632 DLC; deleted in liver cancer protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16470293_16490666.mRNA True 4763 mRNA 0.48 14 16470253 16492041

Neighbor

gene id symbol gene type direction distance location
CI01000304_16458657_16462430 NA coding upstream 7230 16458520 ~ 16463023 (+)
CI01000304_16433456_16438415 NA coding upstream 31722 16432429 ~ 16438531 (+)
CI01000304_16406577_16413911 KL coding upstream 56030 16406067 ~ 16414223 (+)
CI01000304_16370076_16401491 FRY, FRYB coding upstream 68639 16369970 ~ 16401614 (+)
CI01000304_16358266_16367985 FRY, FRYB coding upstream 101913 16358266 ~ 16368340 (+)
CI01000304_16505174_16506124 NA coding downstream 12723 16504764 ~ 16513625 (+)
CI01000304_16565077_16641637 NBEA, NBEAA coding downstream 73036 16565077 ~ 16642341 (+)
CI01000304_16740135_16740524 SERTM1 coding downstream 246805 16738846 ~ 16740995 (+)
CI01000304_16743239_16743811 RFXAP coding downstream 250462 16742503 ~ 16743811 (+)
CI01000304_16761621_16764983 EXOSC8 coding downstream 269580 16761372 ~ 16765057 (+)
G428069 NA non-coding upstream 47304 16422747 ~ 16422949 (+)
G427866 NA non-coding upstream 249845 16220030 ~ 16220408 (+)
G427868 NA non-coding upstream 250316 16218447 ~ 16219937 (+)
G428027 NA non-coding upstream 340173 16129707 ~ 16130080 (+)
G427864 NA non-coding upstream 372760 16091400 ~ 16097493 (+)
G428116 NA non-coding downstream 157851 16649892 ~ 16654939 (+)
G428188 NA non-coding downstream 239566 16731607 ~ 16731828 (+)
G428197 NA non-coding downstream 287322 16779363 ~ 16780995 (+)
G428201 NA non-coding downstream 300252 16792293 ~ 16792623 (+)
G428232 NA non-coding downstream 361509 16853550 ~ 16853767 (+)
G428017 NA other upstream 386539 16083230 ~ 16083714 (+)
G427860 NA other upstream 580662 15885454 ~ 15889591 (+)
G426828 NA other upstream 1519661 14948890 ~ 14950592 (+)
G426312 NA other upstream 2139367 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2891406 13578049 ~ 13595097 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 518689 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 822797 17315087 ~ 17315600 (+)
G429050 NA other downstream 1190230 17682271 ~ 17684763 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016135 LOC104923292 coding CM030122.1 CM030122.1 8964206 ~ 8978905 (+)