CI01000304_17776984_17798369


Basic Information

Item Value
gene id CI01000304_17776984_17798369
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17776913 ~ 17798369 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17776984_17798369.mRNA
AAGATGGAACCATACAAACTGGGAGAGGAGGAGAGTCAGAATCAGAGAAAGAGTTTGACCCTTTCACCAGTAAACAGGAGCCACCAACTGACATCCAGCAGCTCACAACAGATGCAGTACCAGTCCTCCCCAACCTAAGACTGCTTAAACTCCACTCAGCTCTGATGACCAAGAGCTTTGAGGGAGATCAGCAGTTTTTTAAAGAGGCACCACACACCGTGCCAACAGTCTCTACCTCTACATCTAACACTGAACATTCACTTCTGGTGCGTCAGGAAGATTCAGCAGTTTTCTCTGACCATGTGACCACATTGACCATGCCTGCGGCAACATCTGTTGAACAAGGAAAACCCAGCAAAAGCCGTAGTAGAACATCAGAGAAGATAGCAGTCACCTCTCAACCTCTCACAAACCCCACCGTTCCAACCAGCACTCCCACAAGCACCAGTCAAATCAGAACTCTCACCACAACAACAAAGAAAGACAAGAAAACTACTTTGCCACCACTGTCTCTGTCAACTTCACCTAAGAAAGAACCACAAAGGCCAGAAGGGAAAACCACATCAGGATACTCCTTTGAGACATATTCAGCTCACTGCGATATGAACTTCACAGAGGCTGAGGGTTATATAGAGCTCCCTCTGGATGTCTCATTTGATTCCCACATGCATTGCACCTGCATGGTTACGGTATATCTGGGTTATGGTGTTGAGATTCAGGTGCTGAACGCGAGTTTGGATGATGGAATGGAGGCAGTTCTGGAGGATCTGGGTGGACCTGTGACCTCCATCCTGGCCAACAACTCAGTGTTATCCAGGGGTCTGGTGATACGGAGCTCTAGTAACCAGATCTCTGTGCGGTTCAGCAGTGAATGGCCCGCTCGCCCTGGCTTATTACTTCTGCGGTATAGAGCCTTTGCTCTGAGTTGTGCATCCCCGCTGGCCCCTGATAATGGTGAAGTATCAGTCACTGGTCTTCAGGTTGGGGGCATGGCCTATTTCTCCTGTCTGAATGGCTATCAGCTCCAGGGCCCCACCTCCCTCACGTGCCGAAATGCCACCACACCCTACTGGAGTGGCAGAGAGCCCAGGCTCCTCATAAAGGATGGGAGTAACATTGACTCTCCGCCCCTGTATGACTCGTATGCAGTGGAGTATCTGCCCATTGAGGGGGTCACAAGCACCAGCAGGCATCTGTTTGTGGAATTTACCAGTGATGAGATGGGCACATGCACTGGCGCTGCCATCCGTTATGAAGCATTTGCTCAGGGCAGCTGTTATGAGCCATTTGTGAAGTATGGAAATTTCTCCACGAGTGATCCTGCGTTTGGAGTTGGTTCTGTGGTGGAGTTCACCTGTGAGCCGGGTTACACGCTGGAGCAGGGCGCTGTTATTTTAGAGTGTGTAAATGATGAAAATCCACAATGGAATGAGACGGAACCAGCATGCCGAGCGGTGTGCAGTGGAGAAATAACAGATTCAGCAGGTGTGGTGCTTTCTCCAAACTGGCCTGAAGCGTATGACAAGGGTCAGGATTGTATCTGGGGTCTACATGTGGAGGAGGACAAGAGATTCATGCTGGATGTCCAGGTAGGTTTGGAGTGTTATCAATGGGTTTCGTGGCGTTATTGGTGGTTTTTGTGGTGGTACGAGTCGGGATTAGGGTGTCTTCGTCTGGGGAAGAATGACCTGCTGACCTTTTATGATGGTGATGACCTCACAGCCAACATCCTGGGCCAGTACAGTGGTTTCCTCCCTCGATTCAGACTCTACACCTCTACGGCTGATGTGACCATCCAGTTTCAATCTGATCCAGCCTCCAATGTCTACGGATACAACAATGGCTTTGTAGTGCATTTCTTTGAAGTGCCACGTAACGACACATGCGCAGAGCTACCAGAAATCCTTAATGGCTGGAAGAGCACATCTCATCCTGACCTGACCCATGGAACCGTTATTACCTACCAGTGTTACCCAGGCTTCCATCTGCAGGGCTCAGAGATCCTGATGTGTCAGTGGGATCTGACATGGAGTGGAGACGTCCCCCTCTGTGAGAAAATTATGTCATGTGTGGATCCGGGACTAGTGGACAACAGCCGCAGACTGGTGACGGGCTCTCGTTACGCTGTGGGATCCTCTGTGGAGTATATCTGCAACAAAGGATACTCACTTTCTGGCCCTGGAGTGCTCACTTGCTACAGCAGAGAAACTGCAGACCCAAAGTGGAGTGAAAAACTGCCAAAATGTGTCCCTGAGAGATATGAACCCTGCAGTAACCCTGGCGCCCCCTCTACGGCCATCCAGAGTTCAGAGAAAGCTTTCTTCCAGGCAGGAGAGACTCTAAGCTTCACCTGTCGTGCAGGTTATGTGCTTCAGGGTGAAGCCACTATCCACTGCATCCCAGGACATCCCTCTCAATGGAGCAGTGCGCCCCCTATGTGCAGAGCTGCCGATTCAGAGTTTGATGTGGAGGGCGTCAACATTGCCATCGCAGTTCTGATTCCCGTTGCAGTGGTGCTGATGCTACTCTTGGTCTTTTTCCTCTGCATTTCAATAGCTCAAAGCAAGACCCTTCAGCTCCCCGGGTCGTCTTCTCCACCGTACGACAACATGACCGAAGAATCTGCATTTGACAACCCCGTGTATGAGACGGGAGTAAGTATGGATGCCATGAACCTCAGAGACGTGGGCTCTCACAACACCATTGTCCTGTCCTGATCAACCCTGCCTGCCATTCTGTCATTCCACCTGTCATCTGTGACTCTGACCTGATCTGCAGAACAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17776984_17798369.mRNA True 2788 mRNA 0.50 14 17776913 17798369

Neighbor

gene id symbol gene type direction distance location
CI01000304_17761838_17774880 PHF12A coding downstream 2033 17761550 ~ 17774880 (-)
CI01000304_17753888_17759116 DHRS13A.1 coding downstream 17797 17753723 ~ 17759116 (-)
CI01000304_17748958_17752035 DHRS13A.2 coding downstream 24878 17748386 ~ 17752035 (-)
CI01000304_17722987_17728462 PLEKHB1 coding downstream 48348 17721207 ~ 17728565 (-)
CI01000304_17705069_17711334 DNAJB13 coding downstream 64446 17705033 ~ 17712467 (-)
CI01000304_17837247_17882808 MYO18AA coding upstream 38878 17837247 ~ 17883960 (-)
CI01000304_18007357_18007779 NA coding upstream 208686 18007055 ~ 18008022 (-)
CI01000304_18010568_18011800 NA coding upstream 211885 18010254 ~ 18011834 (-)
CI01000304_18018841_18019759 NA coding upstream 220472 18018841 ~ 18020494 (-)
CI01000304_18021327_18022049 NA coding upstream 222682 18021051 ~ 18022109 (-)
G429202 NA non-coding downstream 72770 17659874 ~ 17704143 (-)
G429220 NA non-coding downstream 208096 17565702 ~ 17568817 (-)
G429238 NA non-coding downstream 212515 17564100 ~ 17564398 (-)
G429216 NA non-coding downstream 247202 17529318 ~ 17529711 (-)
G429266 NA non-coding downstream 253198 17523382 ~ 17523715 (-)
G429300 NA non-coding upstream 22391 17820760 ~ 17821223 (-)
G429301 NA non-coding upstream 23790 17822159 ~ 17822403 (-)
G429303 NA non-coding upstream 27073 17825442 ~ 17825664 (-)
G429305 NA non-coding upstream 29632 17828001 ~ 17828552 (-)
G429316 NA non-coding upstream 101297 17899666 ~ 17899895 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 909675 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 995954 16769417 ~ 16780398 (-)
G427376 NA other downstream 2515508 15258964 ~ 15261405 (-)
G427423 NA other downstream 3415021 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3489309 14286960 ~ 14294449 (-)
G429331 NA other upstream 125494 17923863 ~ 17924684 (-)
G429499 NA other upstream 439350 18237719 ~ 18238319 (-)
G429673 NA other upstream 788073 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002953 sez6a coding NC_007121.7 CM002894.2 36828069 ~ 36927594 (-)