XLOC_002953 (sez6a)


Basic Information

Item Value
gene id XLOC_002953
gene name sez6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36828069 ~ 36927594 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005451
TTGTCCCTCCCCCCAACCATTCAAATGTCTCAATCCCTCAAGGTTTAGTGTGTATTAGAACTTGTTCTGGTTGCATTATAGCGCGATCTATCCATCCTCGTGTTATATCTAACTCTCCTTTGCCTCTCGGTACACAAAACCAAAAATCCTCTGAAGTCTAAACACTGTCTGCTGCTGTCCGGAGTGTCTGACGGAACTGTCCGCGGTGCTGAAGCTCCGCAATCCGCTTACAGCAGCCGTGAGTCGGGATAGCTGTTTCTCTGCGCTGAGAGTCGTTTTTCAGACCTCACGGAAATCTCATCTGACATCCAGTTCCTTTACTTGGGATATTTTAAACACAAGGACAAAttacagtgtgttgttaggaGTCGTTTCAGTATGTGCGTGAGGATCGAGCTCCAAACGGACCGGCTCTTTCTGCTGCTCGTACTGAGTCTTTCAGTGATTTACACGAGCTGTCAAGAGAATGGAACTGTAATAACCTGGAGAGGAGGAGAATCAGAATTGGAGAGAGAGTATGACCATTTCACCAGCAAACAAGAGCCACCAACTGACGTCCAGCAGCTTACGACAGATGCAGTACCAGTCCTCCCTAACCTAAGATTGCTCAAACTCCACTCAGCTCTGCTGACCAAGAACTTTGAgggagatcagcatttctttaaaGAGGTACCCCACACCATACCCACAGTCTCTACCTCCATATCCAACACTGAACATTCATATCTGGTGCCTCAGGAGGATGCAGCAGCTTTCTCTGACCTTGCAACTACAATGACAATGACTGTGACAACGCCTGTGGAACAGAGACAGTCCAGCAAAAGCCATAGTAGAGCATCGGAGAAGATGCTAATTACCTCTCAACCTCTCACAAACCCCACCGCTCCAACTAACACTCCCACAAGAACCAGTCAAAAGACAACTCTCACCACAATGACAAGGAAGGCCTTCAGCAAAGAAACTACATTGCCACCATTGTTTCTGTCAACATCACCTAAGAAAGAACAACGAAGGCCAGAAGAGAAAACCACACCCGGATACTTGTCTGAGATAACTCCAGCTCAGTGCGATATGAACTTCACAGACGCTGAGGGTTATATTGAGCTCCCTCCGGATGCCTCATTTGATTCCCACATGCATTGCACCTGCCTGGTTACTGTGTATCTGGGTTATGGCATTGAGATTCAGGTGCTGAACATTAGTTTGGATGACGGAATGGAGGCAGTTCTGGAGGATTTGGGTGGACCCATGACCTCCATTCTGGCCAACAGCTCAGGATTATCCAGGGGTTTAGTGCTGCGGAGCTCTAGTAACCAGATCTCAGTACAGTTTAGCAGTGAACGAACCACTCAGCCCGGTTTATTAATTCTGCGGTACAGAGCCTTTGCCCTGAGCTGTGCATCTCCAACTACCCCTGATAATGGTGAGGTTTCAGTCACTGGTCTTCATGTGGGGGGCGTGGCCTATTTCTCCTGTCTGATTGGCTATCAGCTCCAGGGCCCTGCCTCCCTGACGTGCCGAAATGCCACAACACCATACTGGAGTGGCAGAGAGCCCAGGTGCCAAGTTGCTTGTGGGGGGATGATGAGAAATGCCACTCAGGGTCGCGTGATCTCTCCGGGCTTTCCTGGAAACTACAGCAACAATCTGACATGTCACTGGATACTGGAGGCTCCTGAGGGTCATCGGCTGCACATTCACTTTGAGAAAGTGGCACTGGCTGAGGATGATGACAGgcTCCTCATAAAAGACGGCAGTAACATTGACTCTCCTCCACTATATGACTCGTATGCAGTGGAGTATCTGCCAGCTGAAGGAGTCACCAGCACCGGGCAGCATCTGTTTATTGAATTCACCAGTGATGAGATGGGCACATGCACTGGCACTGCCATCCGATATGAAGCATTTTCTCAGGGCAGCTGTTACGAGCCGTTTGTGAAATATGGAAATTTCTCCACAACTGATCCTGCGTTTGGAGTTGGCTCTGTGGTGGAGTTCACCTGTGAGCCGGGATACACGTTGGAGCAGGGCGCTGTGATTTTAGAGTGCGTAAATGAAGAAAATCCACAATGGAATGAGACGGAACCAGCTTGCCGAGCGGTGTGCAGTGGAGAAATAACAGATTCGGCAGGTGTGGTGCTTTCTCCAAACTGGCCTGAAGCATATGACAAAGGTCAGGATTGTATCTGGGGTCTGCACGTGGAGGAGGACAAGAGATTCATGCTGGACGTCCAGGTTCTTCATCTGGGGAAGAATGACCTGCTGACCATTTATGATGGTGATGACCTCACAGCCAACATCCTAGGCCAGTACAGCGGTGTCCTCCCTCGGTTCAGACTCTACACCTCCACGGCTGATGTGACAATCCAGTTTCAGTCTGATCCAGCCTCAAACGTCTACGGATACAACAACGGCTTTGTAGTTCATTTCTTTGAAGTGGCACGTAACGACACTTGTGCGGAGCTGCCAGAAATCCTGAATGGCTGGAAAAGCACATCTCACCCTGACCTGACCCATGGCACCGTTATTACCTACCAGTGTTACCCAGGCTTCCGGCTGCAGGGCGCAGAGATCCTAATGTGCCAGTGGGATCTTACATGGAGTGGAGACGTGCCCCTCTGTGAGAAGATTATGTCATGTGAGGATCCAGGACTGGTGGAAAACAGCCGCAGAATGGTAACCGACTCTCGCTATGCTGTGGGATCATCTATCGAGTACATCTGCAACAAAGGATATTCGCTTTCTGGCCCTGGAGTGCTAATCTGCTACGGCAGAGAGACTGCAGTCCCAAAGTGGAGTGAAAAACTGCCCAAATGTGTCCctgaGAGATATGAGCCGTGCAGTAATCCTGGTGCTCCCTCCTTGGCCATCCAGAGCTCAGAGAAAGCCTTCTTCCAGGCAGGAGAAACCCTGAGCTTCACCTGCAGGGCGGGTTATGTGCTACAGGGTGAAGCCACTGTCCACTGCCTACCTGGTCATCCGTCTCGGTGGAGCGCTGCGCCCCCTATGTGCAGAGCTTCTTCAAGAAACACTGAACAACACAGACTGAACGGTGCTGATTCAGAGTTTGACGTGGAAGGCGTGAACATCGCCATCGCGGTTCTGATTCCTGTGGCAGTGGTGCTGATGCTGCTCTTGGTGGTTTTTCTCTGCATCTCAATAGCTCAAAGTAAGAGTCTTCAGCTCCCCGGGACATCTTCTCCACCATACGACAACATGACTGAAGAATCTGCTTTTGATAACCCTGTGTATGAGACGGGAGATGCAAGGCAATACGAGGTGTGTATGTAGAATCCATCTGTATTTCTTTTGCCACCTCTCCTGTTTATCAGCCGGGctcctgtaaatgtttttttctctctacGACCTCTGCCAGCACGTTAAAGATGGTGGACAATGGGCTAGTATTTCTGTAGCACATAAAAGCCTGAGGTTTGTGGTTTCTTTCTCCTTTTTTTGTTGATAAAAAACCCCAAGTCTTACACATTGAGTCTGGACTACATCAGAATGCACTGGATTCATTGTTTCACATTGGGGAACAAGAGAGGTGAAAGCTGTGTTCTCCCAAATGCATCCAAACATAGGAGATTTTCAGTCTTGAGTTGCACTGGTGATGGCGATTAACCATGTATAACACTCTTGCTGTATAGAAGCCTATTTGCAGaacactttgtaaataaactgtCTAAAACTAAAA

Function

symbol description
sez6a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEZ6 (seizure related 6 homolog).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8208 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEZ6 (seizure related 6 homolog).

Ensembl:

ensembl_id ENSDARG00000100876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005451 True 3697 mRNA 0.49 17 36828069 36927594

Neighbor

gene id symbol gene type direction distance location
XLOC_002952 phf12a coding downstream 2085 36811372 ~ 36825984 (-)
XLOC_002951 dhrs13a.1 coding downstream 19721 36795861 ~ 36808348 (-)
XLOC_002950 dhrs13a.2 coding downstream 34657 36784756 ~ 36793412 (-)
XLOC_002949 PLEKHB1 coding downstream 89427 36731039 ~ 36738642 (-)
XLOC_002948 pimr137 coding downstream 101881 36720166 ~ 36726188 (-)
XLOC_002954 myo18aa coding upstream 23179 36950773 ~ 37075361 (-)
XLOC_002955 BX323076.2 coding upstream 113484 37041078 ~ 37042232 (-)
XLOC_002956 omga coding upstream 406676 37334270 ~ 37337579 (-)
XLOC_002957 CT573231.1 coding upstream 424886 37352480 ~ 37357303 (-)
XLOC_002958 NA coding upstream 490640 37418234 ~ 37476245 (-)
XLOC_002945 AL845435.1 non-coding downstream 165458 36654197 ~ 36662611 (-)
XLOC_002944 NA non-coding downstream 177165 36642166 ~ 36650904 (-)
XLOC_002942 NA non-coding downstream 217168 36595380 ~ 36610901 (-)
XLOC_002939 NA non-coding downstream 358174 36465343 ~ 36469895 (-)
XLOC_002926 BX088524.4 non-coding downstream 664775 36163179 ~ 36163294 (-)
XLOC_002960 NA non-coding upstream 801717 37729311 ~ 38025967 (-)
XLOC_002961 NA non-coding upstream 937825 37865419 ~ 37889561 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_17776984_17798369 NA coding CI01000304 null 17776913 ~ 17798369 (-)