XLOC_002951 (dhrs13a.1)


Basic Information

Item Value
gene id XLOC_002951
gene name dhrs13a.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36795861 ~ 36808348 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005445
gtctactcgaagttgattgacccaactcagatcagctgttctgaaaccgaaaactcagagtttttaatctctcggtaaatcaactcagagttcacgtttaaactctgagttgtttgaacctccttactgaaacaggcccctgctgTGATTTCAGCCTGAATAGCAGCAACAGAAGAGTGGTGTGAGAAATTGAATATAATAGGCGTCTGTGCGCTGCTTTTGTAATCTAACGTTACTGTAAATAAGCTGTGTTCAAGAGGGCGTTATCATCTTCCTGTGCGAGTCTGGAACAAACCGACCTGTTTCACAACTAGATCCAGCAGTTACTGATCAGATCTGCTCGTGTGAGTATAATGTTTTTCCTTTTGTTAACATGCGGAGGACTGCTCGCGGTTTACCTGCTGCTGCGGGTGACGGTGATGAAAATGCCGAGATGTACAAGTACCGCTAGGCTGGACGGGAAAACGGTAATCGTGACCGGAGCAAACACTGGAATCGGCAAAGCCACCGCGATGGACCTGGCGAGAAGGGGAGCTCGTGTAATTCTCGCCTGCAGGGATGAAGGCAGAGCTCAGGCTGCGGTCACTGACATCCAGCGGGAAACGGGAAGCAAAGAGGTGTTGTACATGCACTTGGATCTGGCCAGTCTGAAGTCTGTGAGATCTTTTGCTGAAAACTTCCTCAAGAAAGAATCCAGATTGGACATTCTTATCAACAATGCAGGACTTGTGATTGGTGGCAAGACTGAGGATGGCTTTGGAAGGATGTTTGGCGTAAATCACCTTGGTCACTTCTTGTTAACGGATCTGCTGCTGAAACGGTTAAAAGAGTGCGGTCCCAGCAGAATCGTAACCGTCTCTTCGATGGCCCATGCGTGGGGGAAAATGGATTTCAACTGCATCAACGCTCAAAAAGATTTGGGCAAAGGAGATTCTGCTCTGGGCTTGCTGATGTTGTACAGCCACAGCAAACTGTGCAACGTCCTGTTCACACACGAGCTGGCCAAGAGACTCAAAGGCACAAACGTCACCTGTTACAGTCTGCATCCAGgGGCCATCAAAACTGAGCTAAGCCGCCACAGCAACATTTGGTGGAGTTTGTTCATGGCACCAATTTTTCTGCTATTCTTCAAGGATGTGGTTTCTGGAGCTCAGACGTCTCTGCACTGTGCACTTCAGGAGGGCATCGAACCTCTGAGCGGACGCTACTTCTCTGGTTGTGCAGTTCAGAATGTTTCTGCTAAAGCCAGAGATGATGCAGCAGCCAAaaagctctgggaaatcagtgaGAGGTTTGTTGGATTAGCATGAGATTGATGGTTTAAAGATACATTTAACGCATTTGCAGTTAATTTAGTGAAACCTGTGCTGCAtctgtattttatgtattaataaaAGCCTGTCAAACATTGTGCAACAGTAGTAATAAAATAGTTTTCAACATTTTCTGTGCGCAAATTTTTGCATTGAATGAGCAAAGAATGTAACTTACTGTGCATTTTTGTGATATTACTCATGTTGTTGTGTCATACCGGAGTAAAGACGCAACTCTATAGGTGTGTCCAGGGATGTTGAGTCATTAAAATGTTGAATGTGTCAC
>TCONS_00005446
ACTGACTGACATTTGTGCTGGATTAATAATTGCAGGAGCAAACACTGGAATCGGCAAAGCCACCGCGATGGACCTGGCGAGAAGGGGAGCTCGTGTAATTCTCGCCTGCAGGGATGAAGGCAGAGCTCAGGCTGCGGTCACTGACATCCAGCGGGAAACGGGAAGCAAAGAGGTGTTGTACATGCACTTGGATCTGGCCAGTCTGAAGTCTGTGAGATCTTTTGCTGAAAACTTCCTCAAGAAAGAATCCAGATTGGACATTCTTATCAACAATGCAGG

Function

symbol description
dhrs13a.1 Predicted to enable NADP-retinol dehydrogenase activity. Predicted to be involved in retinal metabolic process. Predicted to be active in mitochondrial inner membrane. Is expressed in Kupffer's vesicle and forerunner cell group. Orthologous to human DHRS13 (dehydrogenase/reductase 13).

GO:

id name namespace
GO:0042574 retinal metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-58 Predicted to enable NADP-retinol dehydrogenase activity. Predicted to be involved in retinal metabolic process. Predicted to be active in mitochondrial inner membrane. Is expressed in Kupffer's vesicle and forerunner cell group. Orthologous to human DHRS13 (dehydrogenase/reductase 13).

Ensembl:

ensembl_id ENSDARG00000026322

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005445 False 1599 mRNA 0.45 5 36795861 36808348
TCONS_00005446 True 279 lncRNA 0.50 2 36803816 36807660

Neighbor

gene id symbol gene type direction distance location
XLOC_002950 dhrs13a.2 coding downstream 2449 36784756 ~ 36793412 (-)
XLOC_002949 PLEKHB1 coding downstream 57219 36731039 ~ 36738642 (-)
XLOC_002948 pimr137 coding downstream 69673 36720166 ~ 36726188 (-)
XLOC_002947 mrpl48 coding downstream 104180 36684000 ~ 36691681 (-)
XLOC_002946 dnajb13 coding downstream 113339 36673387 ~ 36682522 (-)
XLOC_002952 phf12a coding upstream 3024 36811372 ~ 36825984 (-)
XLOC_002953 sez6a coding upstream 19721 36828069 ~ 36927594 (-)
XLOC_002954 myo18aa coding upstream 142425 36950773 ~ 37075361 (-)
XLOC_002955 BX323076.2 coding upstream 232730 37041078 ~ 37042232 (-)
XLOC_002956 omga coding upstream 525922 37334270 ~ 37337579 (-)
XLOC_002945 AL845435.1 non-coding downstream 133250 36654197 ~ 36662611 (-)
XLOC_002944 NA non-coding downstream 144957 36642166 ~ 36650904 (-)
XLOC_002942 NA non-coding downstream 184960 36595380 ~ 36610901 (-)
XLOC_002939 NA non-coding downstream 325966 36465343 ~ 36469895 (-)
XLOC_002926 BX088524.4 non-coding downstream 632567 36163179 ~ 36163294 (-)
XLOC_002957 CT573231.1 non-coding upstream 544132 37352480 ~ 37357303 (-)
XLOC_002958 NA non-coding upstream 609886 37418234 ~ 37476245 (-)
XLOC_002960 NA non-coding upstream 920963 37729311 ~ 38025967 (-)
XLOC_002961 NA non-coding upstream 1057071 37865419 ~ 37889561 (-)

Expression


Co-expression Network