XLOC_002952 (phf12a)


Basic Information

Item Value
gene id XLOC_002952
gene name phf12a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36811372 ~ 36825984 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005447
GTGCGTCAGTAAGCGCGAGCGTTCCTTCATCACAACAGAGACGCTCCGCCGTTAAGTCGCCTTTCACCGGGAGAAAAACGTTTGTTTTCCGCTTCTGCCAGTTCCCTGCATGACCTGGCCTTCAGGGGGGCTTGATGTTAGACGTCTTCGCATCATGGATTTACTGATAACGTCTGTGTGTTTATTCTTCCTTCTGTTACCGGGCCGGAGTCTCGCAGAGCACCGGGGATAGAGGCCTCCGCGCGCCTGCTCGATTAACGGAGAGCCCGCGCGGAGCCACAACACACACGGGCGGGAAATCCTACGTGTTTTTGGCAGAGGTCAAAGGCTATTCGTCTGACAGTGGTCGAGGTGCAGCGGCTGACGGAATCGGAACCAGTCGGGACCGGTGTTGATGTGGGGTAAAATGGAGACCCCGACGATCATGTACGATCTGGATACCTCCGGTGGACTGATGGAGAAAATCCAGACCCTGCTGGCTCCGCCCAAGTCTGAGGACGGAGAGAAGAAGAACAGAAAGCCGGACAGGAGCACCAGGAGATCCGGAAGGGCCACCAACCATGACATCTGTGACAGCTGCCGGGAAGGAGGAGATCTGCTGTGCTGTGATCACTGTCCTGCTGCTTTCCATCTACAGTGCTGTAACCCACCATTGAGCAGAGAAATGCTACCCTCTGGTGACTGGATGTGTCATCGCTGCACTGTTCGCAAAAAGAAAAGGGAACAGAAGAAAGAGCAAATTAACGGCCTGCTGGAGCGGCAGCTGGGGAAGCAGACTCCTCCTCCAGCTCCTGAGCAGGATTGTGGGACGTTACGACTGGATCCCTCTGTGGGGACGGGTGGCACAGGCCTGCGGGCCGCCGTCGCACAGGTACGACTTTTGGAGAGACGACACAGCAGCCGACCTGCGACCCCCAACTCCAACACTTCTTCAGCAGACACCCCCACGCCATCAGAGCAGAACGACACAGAGGAAGACCTCTTGGATGTGGAGGATGAGACTCAGGGTTCAGAGCCTGAACTCTTGAATACCACGACCACCCTCAAAAGACCATTTGACCTCCTAATAGCCGCTGCCATGCAGAGGAACCCCACGCAGTTCCAGCTTCCGAATGACCTCACCTGCACAACCGCACTTCCAGGCACCAGCAAAAGGAGAAGGAAAGACGAGTTGTCCAGCAAGAGTGTTAAACGGCCACAACACGAGCTGGACAGTTGTGGACTGGTTCCACTGCCTGTTAAAGTGTGCTACACATGCAGCAGGAGCTGCCGATTGGCTCCACTGATCCAGTGTGACTTTTGCCCTCTCTTATTTCACATGGACTGTTTGGACCCGCCTCTCACTGCCTTCCCCACAGGCAGGTGGATGTGTCCCAACCACATCCAGAACCTGATACTGAACCAGAGATCCTTAACCATCAGCAACCGTTGCCAGTTATTTGACCAGTTTCAGGACTGTATATCTCAGCATGCTGTCAAGCTTGACTTCCTCCAGCGGATACATCGACAACACCCCCCAATACAGCGATCAACTCATGCCAGAAGCAAAAAGACTCTTAAGGTTCCAGATGCCATAAAGTCACAGTATCAGAACCCACCTACTTTGATGGCATCAGCAGGAGTCCGTGAAGGAGAACTGATCTGTACTGGCCTTCCTGAAGCTTCTGTCCCACAGCACTTAGCCAGTGAAGATGAACAACATCAGTGGCTCAAAGACATCATCTCGCTGCAGTGCAGCATTATGAGGCATTTAAGGAACAGACAAACATCTCATTGGGATTCAGAGCACACAGAAAAGACTGATCTAAAACTCAGAGACTCCTGCCAGAGTGCCGCCTCGCAGGGCAGCCAGAACTCTTCACCAAAAGTTCCCTGTAGCTCATGTACTGAGGGACTGTGTCAGAACTGTAAGACCACAAACGGCCCTGTAGACCAATCGGTTCAGTCCAATGGAACACAGGATCCTGTTAGAACCCAAAACAAGAGCGCTGACCGTGAAAAGCCCTGTTTACCCATGCCCAGTCCACTCAACCATGCCAACTCTGGAGCCATTATCAAGGGCGAGGATGCCAGTTTAAAGCCTCGTAGTGGCACTGATGTCCTTCCTCCTGCTCGTGTCAAATCTGAGCCCCGAACTCAACCATGTGATCATGCTAAAACTCCACCGGCTTCAGATGCAGCTGCAAAAGTCTCAGACTCCACTGTATGTACAGGAGCACATGCTGTTAAACCACAAAAAGTCACCTCAGACGCTGGGTCAAATGGACAGAGATCTCCATCTTCTTCTTGTGGTGGAAAGTCCAGTCTGGACTCAGTGATGGCAGGCAGTGGGGACATCTCCTCTTGCACAGAACCCAACATGTCAGAGCTGTCCGGTCGGATAAAAGACATCATGCAGGGCGGTGGAGAGGTTGAGCTTAACGCATTAGATGAGAAATTTATCAAGCTTTTGGCCTGGCAGCGGATTCAGCAGCTTTTTGACTCAAAATCATCTCCTGTTCAGAGCAGTTCTCCTTTATCCGTTTCTCCGGCTCATAGGAAACACGGTGAAGCTCAGAACAGGGAGGTGCAAGCAAGAGCTTCATTCTGTTCGGTCTCAGGAAATGCTGTCAACATGTGCTACAGGAGTCTGCACATCGGGACAGGTGCTGATATGGACGTGTGCCTTACAAACTACGGGCATTGTAACTATGTTTCAGGGAAACATGCCTGTATATTTTATGATGAGAATACCAAGCAGTATGAACTGCTGAACTACAGCGAACATGGGACAACCGTGGACAACATACTGTATTCATGTGACTTTTCAGAGAAAATGAGCCAGAGTCCATCCAGCAATCTTCTCACCAAAGTGCAGAACATCATCCGACGCTGCAGGAAAAAAGAACAAGAAGATTCTCTGAATAGTGTTCCCTCAGCAAAAGAAGTCACACACATGAGCTGCCAGTCCCAGGACGCTTCAGTCACTCCCTGTAACTGTAAAAACAGCGGCTCCCGTATGATCGGAGGCAGTGGTGCAGGATGGGAAGGCACTGCGCTCCTCCATCACGGAAGTCACGTCAAACTGGGCTGCTTGCAGTTCATTTTCAGCATCGCAGAGTTCGCCAACAAGCCACTTAAAGAGGAGCTCAGCGCCTGCAGCCTCGCTCTCACACCTGGCCAACAGGGGGAGCAGCTGAGCAAACCCAATCCTCCGCTACAACACAACCTTGTAACTTAACCCTGTACAGTTCAAACGGTTTGCTAACTATTCTATTGTTTATACTCTTGCATGAGGTGACGTTTTTCTAATTCTTTTGGACTCTTTTTGGCAGATTGCACATTTTTTGTGTCTCAATGCAAGACTTGCATTTTTAAAGGGAAACTTTGGTCATCAGAACCGTCGAGCAGTTTTCACATGTAAAGAAATCCAAACATCATCTATTTTGTGCCAGTAACAAAAGTTTTTATACAAACaagcgtcttcttttattttACCCATCCCATAAAAACGGATGCTTTTATTTATGTCCTCTGGAGCGAAATGTGAGGAGACTTGTAgatatgtatatgtgtgaataGACAAAAATCCACAACATGATTCAGCGCACAAACAAAAGTGCTCCAGTTTGTATTATTTCTGCCGTGCACCATTTGGTATCTGTCTGTTTCATGTGTTCTGTAAGTTTTCACCAAGTTCTTGTGTCAAACGATGTAAATACAaaccatattttaaaataacctgCTTTAGAAATCCAC
>TCONS_00005448
ATGTGGGGTAAAATGGAGACCCCGACGATCATGTACGATCTGGATACCTCCGGTGGACTGATGGAGAAAATCCAGACCCTGCTGGCTCCGCCCAAGTCTGAGGACGGAGAGAAGAAGAACAGAAAGCCGGACAGGAGCACCAGGAGATCCGGAAGGGCCACCAACCATGACATCTGTGACAGCTGCCGGGAAGGAGGAGATCTGCTGTGCTGTGATCACTGTCCTGCTGCTTTCCATCTACAGTGCTGTAACCCACCATTGAGCAGAGAAATGCTACCCTCTGGTGACTGGATGTGTCATCGCTGCACTGTTCGCAAAAAGAAAAGGGAACAGAAGAAAGAGCAAATTAACGGCCTGCTGGAGCGGCAGCTGGGGAAGCAGACTCCTCCTCCAGCTCCTGAGCAGGATTGTGGGACGTTACGACTGGATCCCTCTGTGGGGACGGGTGGCACAGGCCTGCGGGCCGCCGTCGCACAGGTACGACTTTTGGAGAGACGACACAGCAGCCGACCTGCGACCCCCAACTCCAACACTTCTTCAGCAGACACCCCCACGCCATCAGAGCAGAACGACACAGAGGAAGACCTCTTGGATGTGGAGGATGAGACTCAGGGTTCAGAGCCTGAACTCTTGAATACCACGACCACCCTCAAAAGACCATTTGACCTCCTAATAGCCGCTGCCATGCAGAGGAACCCCACGCAGTTCCAGCTTCCGAATGACCTCACCTGCACAACCGCACTTCCAGGCACCAGCAAAAGGAGAAGGAAAGACGAGTTGTCCAGCAAGAGTGTTAAACGGCCACAACACGAGCTGGACAGTTGTGGACTGGTTCCACTGCCTGTTAAAGTGTGCTACACATGCAGCAGGAGCTGCCGATTGGCTCCACTGATCCAGTGTGACTTTTGCCCTCTCTTATTTCACATGGACTGTTTGGACCCGCCTCTCACTGCCTTCCCCACAGGCAGGTGGATGTGTCCCAACCACATCCAGAACCTGATACTGAACCAGAGATCCTTAACCATCAGCAACCGTTGCCAGTTATTTGACCAGTTTCAGGACTGTATATCTCAGCATGCTGTCAAGCTTGACTTCCTCCAGCGGATACATCGACAACACCCCCCAATACAGCGATCAACTCATGCCAGAAGCAAAAAGACTCTTAAGGTTCCAGATGCCATAAAGTCACAGTATCAGAACCCACCTACTTTGATGGCATCAGCAGGAGTCCGTGAAGGAGAACTGATCTGTACTGGCCTTCCTGAAGCTTCTGTCCCACAGCACTTAGCCAGTGAAGATGAACAACATCAGTGGCTCAAAGACATCATCTCGCTGCAGTGCAGCATTATGAGGCATTTAAGGAACAGACAAACATCTCATTGGGATTCAGAGCACACAGAAAAGACTGATCTAAAACTCAGAGACTCCTGCCAGAGTGCCGCCTCGCAGGGCAGCCAGAACTCTTCACCAAAAGTTCCCTGTAGCTCATGTACTGAGGGACTGTGTCAGAACTGTAAGACCACAAACGGCCCTGTAGACCAATCGGTTCAGTCCAATGGAACACAGGATCCTGTTAGAACCCAAAACAAGAGCGCTGACCGTGAAAAGCCCTGTTTACCCATGCCCAGTCCACTCAACCATGCCAACTCTGGAGCCATTATCAAGGGCGAGGATGCCAGTTTAAAGCCTCGTAGTGGCACTGATGTCCTTCCTCCTGCTCGTGTCAAATCTGAGCCCCGAACTCAACCATGTGATCATGCTAAAACTCCACCGGCTTCAGATGCAGCTGCAAAAGTCTCAGACTCCACTTCCAGTCTGGACTCAGTGATGGCAGGCAAACCCAACATGTCAGAGCTGTCCGGTCGGATAAAAGACATCATGCAGGGCGGTGGAGAGGTTGAGCTTAACGCATTAGATGAGAAATTTATCAAGCTTTTGGCCTGGCAGCGGATTCAGCAGCTTTTTGACTCAAAATCATCTCCTGTTCAGAGCAGTTCTCCTTTATCCGTTTCTCCGGCTCATAGGAAACACGGTGAAGCTCAGAACAGGGAGGTGCAAGCAAGAGCTTCATTCTGTTCGGTCTCAGGAAATGCTGTCAACATGTGCTACAGGAGTCTGCACATCGGGACAGGTGCTGATATGGACGTGTGCCTTACAAACTACGGGCATTGTAACTATGTTTCAGGGAAACATGCCTGTATATTTTATGATGAGAATACCAAGCAGTATGAACTGCTGAACTACAGCGAACATGGGACAACCGTGGACAACATACTGTATTCATGTGACTTTTCAGAGAAAATGAGCCAGAGTCCATCCAGCAATCTTCTCACCAAAGTGCAGAACATCATCCGACGCTGCAGGAAAAAAGAACAAGAAGATTCTCTGAATAGTGTTCCCTCAGCAAAAGAAGTCACACACATGAGCTGCCAGTCCCAGGACGCTTCAGTCACTCCCTGTAACTGTAAAAACAGCGGCTCCCGTATGATCGGAGGCAGTGGTGCAGGATGGGAAGGCACTGCGCTCCTCCATCACGGAAGTCACGTCAAACTGGGCTGCTTGCAGTTCATTTTCAGCATCGCAGAGTTCGCCAACAAGCCACTTAAAGAGGAGCTCAGCGCCTGCAGCCTCGCTCTCACACCTGGCCAACAGGGGGAGCAGCTGAGCAAACCCAATCCTCCGCTACAACACAACCTTGTAACTTAA
>TCONS_00005449
ATGGAGACCCCGACGATCATGTACGATCTGGATACCTCCGGTGGACTGATGGAGAAAATCCAGACCCTGCTGGCTCCGCCCAAGTCTGAGGACGGAGAGAAGAAGAACAGAAAGCCGGACAGGAGCACCAGGAGATCCGGAAGGGCCACCAACCATGACATCTGTGACAGCTGCCGGGAAGGAGGAGATCTGCTGTGCTGTGATCACTGTCCTGCTGCTTTCCATCTACAGTGCTGTAACCCACCATTGAGCAGAGAAATGCTACCCTCTGGTGACTGGATGTGTCATCGCTGCACTGTTCGCAAAAAGAAAAGGGAACAGAAGAAAGAGCAAATTAACGGCCTGCTGGAGCGGCAGCTGGGGAAGCAGACTCCTCCTCCAGCTCCTGAGCAGGATTGCCTGCGGGCCGCCGTCGCACAGGTACGACTTTTGGAGAGACGACACAGCAGCCGACCTGCGACCCCCAACTCCAACACTTCTTCAGCAGACACCCCCACGCCATCAGAGCAGAACGACACAGAGGAAGACCTCTTGGATGTGGAGGATGAGACTCAGGGTTCAGAGCCTGAACTCTTGAATACCACGACCACCCTCAAAAGACCATTTGACCTCCTAATAGCCGCTGCCATGCAGAGGAACCCCACGCAGTTCCAGCTTCCGAATGACCTCACCTGCACAACCGCACTTCCAGGCACCAGCAAAAGGAGAAGGAAAGACGAGTTGTCCAGCAAGAGTGTTAAACGGCCACAACACGAGCTGGACAGTTGTGGACTGGTTCCACTGCCTGTTAAAGTGTGCTACACATGCAGCAGgaaACGCATCATCCTTCAGTGTGCTGATATGGACGTGTGCCTTACAAACTACGGGCATTGTAACTATGTTTCAGGGAAACATGCCTGTATATTTTATGATGAGGTAtgccattttaaacatttaagagaaaaaaaatgTAAGCTCTTTTCTGTGATCGCTTTCAAACTTCTGATTCATTTGTCTATGGGGAAATGA
>TCONS_00005450
ACGACTGGATCCCTCTGTGGGGACGGGTGGCACAGGCCTGCGGGCCGCCGTCGCACAGGTACGACTTTTGGAGAGACGACACAGCAGCCGACCTGCGACCCCCAACTCCAACACTTCTTCAGCAGACACCCCCACGCCATCAGAGCAGAACGACACAGAGGAAGACCTCTTGGATGTGGAGGATGAGACTCAGGGTTCAGAGCCTGAACTCTTGAATACCACGACCACCCTCAAAAGACCATTTGACCTCCTAATAGCCGCTGCCATGCAGAGGAACCCCACGCAGTTCCAGCTTCCGAATGACCTCACCTGCACAACCGCACTTCCAGGCACCAGCAAAAGGAGAAGGAAAGACGAGTTGTCCAGCAAGAGTGTTAAACGGCCACAACACGAGCTGGACAGTTGTGGACTGGTTCCACTGCCTGTTAAAGTGTGCTACACATGCAGCAGGAGCTGCCGATTGGCTCCACTGATCCAGTGTGACTTTTGCCCTCTCTTATTTCACATGGACTGTTTGGACCCGCCTCTCACTGCCTTCCCCACAGGCAGGTGGATGTGTCCCAACCACATCCAGAACCTGATACTGAACCAGAGATCCTTAACCATCAGCAACCGTTGCCAGTTATTTGACCAGTTTCAGGACTGTATATCTCAGCATGCTGTCAAGCTTGACTTCCTCCAGCGGATACATCGACAACACCCCCCAATACAGCGATCAACTCATGCCAGAAGCAAAAAGACTCTTAAGGTGATCTACCGTCTGTTAAAGTCACTCAGTATTTACAtgcattagttaaaaaaaaatgtatgatcaAGTGTATGATAAGACAAGTATGATCGTCTTGTGTTGGTGGGCTTTTACAGTATGCATTTTAATATCGATCACAGTTAGTCAGTAACGAAAAAGCAGTTGGACTTGTGTCTGGTTGAACATATATATCATAGGAGTCCAATAAAAATCTCTGTATGCACTCAAAAG

Function

symbol description
phf12a Predicted to enable transcription coregulator activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of Sin3-type complex. Predicted to be active in nucleus. Orthologous to human PHF12 (PHD finger protein 12).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0070822 Sin3-type complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3876 Predicted to enable transcription coregulator activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of Sin3-type complex. Predicted to be active in nucleus. Orthologous to human PHF12 (PHD finger protein 12).

Ensembl:

ensembl_id ENSDARG00000074303

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005447 False 3738 mRNA 0.50 15 36811372 36825984
TCONS_00005448 False 2706 mRNA 0.51 16 36811890 36825590
TCONS_00005449 False 1008 mRNA 0.52 9 36813090 36825578
TCONS_00005450 True 979 lncRNA 0.49 4 36819377 36820823

Neighbor

gene id symbol gene type direction distance location
XLOC_002951 dhrs13a.1 coding downstream 3024 36795861 ~ 36808348 (-)
XLOC_002950 dhrs13a.2 coding downstream 17960 36784756 ~ 36793412 (-)
XLOC_002949 PLEKHB1 coding downstream 72730 36731039 ~ 36738642 (-)
XLOC_002948 pimr137 coding downstream 85184 36720166 ~ 36726188 (-)
XLOC_002947 mrpl48 coding downstream 119691 36684000 ~ 36691681 (-)
XLOC_002953 sez6a coding upstream 2085 36828069 ~ 36927594 (-)
XLOC_002954 myo18aa coding upstream 124789 36950773 ~ 37075361 (-)
XLOC_002955 BX323076.2 coding upstream 215094 37041078 ~ 37042232 (-)
XLOC_002956 omga coding upstream 508286 37334270 ~ 37337579 (-)
XLOC_002957 CT573231.1 coding upstream 526496 37352480 ~ 37357303 (-)
XLOC_002945 AL845435.1 non-coding downstream 148761 36654197 ~ 36662611 (-)
XLOC_002944 NA non-coding downstream 160468 36642166 ~ 36650904 (-)
XLOC_002942 NA non-coding downstream 200471 36595380 ~ 36610901 (-)
XLOC_002939 NA non-coding downstream 341477 36465343 ~ 36469895 (-)
XLOC_002926 BX088524.4 non-coding downstream 648078 36163179 ~ 36163294 (-)
XLOC_002958 NA non-coding upstream 592250 37418234 ~ 37476245 (-)
XLOC_002960 NA non-coding upstream 903327 37729311 ~ 38025967 (-)
XLOC_002961 NA non-coding upstream 1039435 37865419 ~ 37889561 (-)

Expression


Co-expression Network