RNA id: TCONS_00005449


Basic Information

Item Value
RNA id TCONS_00005449
length 1008
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_002952
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36811372 ~ 36825984 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGACCCCGACGATCATGTACGATCTGGATACCTCCGGTGGACTGATGGAGAAAATCCAGACCCTGCTGGCTCCGCCCAAGTCTGAGGACGGAGAGAAGAAGAACAGAAAGCCGGACAGGAGCACCAGGAGATCCGGAAGGGCCACCAACCATGACATCTGTGACAGCTGCCGGGAAGGAGGAGATCTGCTGTGCTGTGATCACTGTCCTGCTGCTTTCCATCTACAGTGCTGTAACCCACCATTGAGCAGAGAAATGCTACCCTCTGGTGACTGGATGTGTCATCGCTGCACTGTTCGCAAAAAGAAAAGGGAACAGAAGAAAGAGCAAATTAACGGCCTGCTGGAGCGGCAGCTGGGGAAGCAGACTCCTCCTCCAGCTCCTGAGCAGGATTGCCTGCGGGCCGCCGTCGCACAGGTACGACTTTTGGAGAGACGACACAGCAGCCGACCTGCGACCCCCAACTCCAACACTTCTTCAGCAGACACCCCCACGCCATCAGAGCAGAACGACACAGAGGAAGACCTCTTGGATGTGGAGGATGAGACTCAGGGTTCAGAGCCTGAACTCTTGAATACCACGACCACCCTCAAAAGACCATTTGACCTCCTAATAGCCGCTGCCATGCAGAGGAACCCCACGCAGTTCCAGCTTCCGAATGACCTCACCTGCACAACCGCACTTCCAGGCACCAGCAAAAGGAGAAGGAAAGACGAGTTGTCCAGCAAGAGTGTTAAACGGCCACAACACGAGCTGGACAGTTGTGGACTGGTTCCACTGCCTGTTAAAGTGTGCTACACATGCAGCAGgaaACGCATCATCCTTCAGTGTGCTGATATGGACGTGTGCCTTACAAACTACGGGCATTGTAACTATGTTTCAGGGAAACATGCCTGTATATTTTATGATGAGGTAtgccattttaaacatttaagagaaaaaaaatgTAAGCTCTTTTCTGTGATCGCTTTCAAACTTCTGATTCATTTGTCTATGGGGAAATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0070822 Sin3-type complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3876 Predicted to enable transcription coregulator activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of Sin3-type complex. Predicted to be active in nucleus. Orthologous to human PHF12 (PHD finger protein 12).

Ensembl:

ensembl_id ENSDART00000190420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005446 lncRNA downstream 5430 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005437 lncRNA downstream 130568 36679548 ~ 36682522 (-) False XLOC_002946
TCONS_00006100 lncRNA downstream 150479 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005434 lncRNA downstream 150490 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006099 lncRNA downstream 162186 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005454 lncRNA upstream 215500 37041078 ~ 37042232 (-) True XLOC_002955
TCONS_00005774 lncRNA upstream 592656 37418234 ~ 37476245 (-) True XLOC_002958
TCONS_00006101 lncRNA upstream 659834 37485412 ~ 37487685 (-) False XLOC_002959
TCONS_00005457 lncRNA upstream 659834 37485412 ~ 37487698 (-) False XLOC_002959
TCONS_00006102 lncRNA upstream 659834 37485412 ~ 37487721 (-) True XLOC_002959
TCONS_00005445 mRNA downstream 4742 36795861 ~ 36808348 (-) False XLOC_002951
TCONS_00005444 mRNA downstream 19678 36784756 ~ 36793412 (-) True XLOC_002950
TCONS_00005443 mRNA downstream 74448 36732673 ~ 36738642 (-) True XLOC_002949
TCONS_00005442 mRNA downstream 74471 36731039 ~ 36738619 (-) False XLOC_002949
TCONS_00005441 mRNA downstream 86902 36720235 ~ 36726188 (-) True XLOC_002948
TCONS_00005451 mRNA upstream 2491 36828069 ~ 36927594 (-) True XLOC_002953
TCONS_00005452 mRNA upstream 125195 36950773 ~ 37075361 (-) False XLOC_002954
TCONS_00005453 mRNA upstream 128041 36953619 ~ 37072776 (-) True XLOC_002954
TCONS_00005455 mRNA upstream 508692 37334270 ~ 37337579 (-) True XLOC_002956
TCONS_00005458 mRNA upstream 659825 37485403 ~ 37487678 (-) False XLOC_002959
TCONS_00005438 other downstream 130576 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005427 other downstream 310759 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 649796 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 1158736 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 1192641 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005456 other upstream 526902 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1226074 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1246499 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 1248734 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005467 other upstream 1465309 38290887 ~ 38316070 (-) False XLOC_002965

Expression Profile

//