RNA id: TCONS_00005455


Basic Information

Item Value
RNA id TCONS_00005455
length 852
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_002956
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37334270 ~ 37337579 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaagcatataaataaataaaaaaatcacaacaaCCCTGATCTGAAGACAAAGCAGAAAGAAAGAGGTGAGGGATGGAGAAAAACTGACAGAAAGAGGACAAGAGCACAGTGATGACAAGGAGAAGGAACACCATGAAGATACAAGAGTGTAGAGTGACATCCTTCCTGCTCTTACTCTGGATTATGTGTTCATACGTTCATGCCGAATGTCCTACAGTTTGCTCCTGTAGCGACAGTCATCGGACAGTTGACTGCTCCTGGAGGGGGTTTAGACATCTTCCATTGGGCCTGCAGAGGAACATTCAATCCCTCAACCTGACCCACAACCGGCTCTCAGACCTAGACCACCACCTAAGCTCCTTCACCCACCTTCGCATCCTGGACATCTCCTACAACCGTCTGCTGCATTTCCCAGCCTCGCTACCAAGGGCACTGTGGGAGATCAACATCTCTGGAAACCGTCTACGTGTGCTAAATAAAGATGACACCGCGTACCAGTGGAACCTCAGAGTTCTGGATCTGTCAGTCAATAAACTGGAGCGTGTGGTCTTCATCAACAACACGCTCCCCAACTTGAAGGCTCTCAACCTCAGTCACAACAAGTTCTGGACGGTACCTACCAACATGCCCCATAACCTGGAAGTAGTGGATCTATCCCATAATACTCTAGTCCAAATTCTGCCAGGATCCCTGATGCGGCTGCACAAGCTGGCTCAGTTTTACTTGCACGCAAACCGTTTCACCGCTGTAAACGAAGAGGCGTTTGAGCATCTGGAAAGTCTGAAGCTCATCACTCTAGGGGACAATCCTTGGGCTTGTGAAGAAACAGCCAACATCAGCTATTTGTTACTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000147705

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005454 lncRNA downstream 292038 37041078 ~ 37042232 (-) True XLOC_002955
TCONS_00005450 lncRNA downstream 513447 36819377 ~ 36820823 (-) True XLOC_002952
TCONS_00005446 lncRNA downstream 526610 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005437 lncRNA downstream 651748 36679548 ~ 36682522 (-) False XLOC_002946
TCONS_00006100 lncRNA downstream 671659 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005774 lncRNA upstream 80655 37418234 ~ 37476245 (-) True XLOC_002958
TCONS_00006101 lncRNA upstream 147833 37485412 ~ 37487685 (-) False XLOC_002959
TCONS_00005457 lncRNA upstream 147833 37485412 ~ 37487698 (-) False XLOC_002959
TCONS_00006102 lncRNA upstream 147833 37485412 ~ 37487721 (-) True XLOC_002959
TCONS_00006103 lncRNA upstream 391732 37729311 ~ 38025967 (-) False XLOC_002960
TCONS_00005452 mRNA downstream 258909 36950773 ~ 37075361 (-) False XLOC_002954
TCONS_00005453 mRNA downstream 261494 36953619 ~ 37072776 (-) True XLOC_002954
TCONS_00005451 mRNA downstream 406676 36828069 ~ 36927594 (-) True XLOC_002953
TCONS_00005447 mRNA downstream 508286 36811372 ~ 36825984 (-) False XLOC_002952
TCONS_00005448 mRNA downstream 508680 36811890 ~ 36825590 (-) False XLOC_002952
TCONS_00005458 mRNA upstream 147824 37485403 ~ 37487678 (-) False XLOC_002959
TCONS_00005464 mRNA upstream 830579 38168158 ~ 38243851 (-) False XLOC_002964
TCONS_00005465 mRNA upstream 833462 38171041 ~ 38243579 (-) True XLOC_002964
TCONS_00005466 mRNA upstream 918977 38256556 ~ 38316134 (-) False XLOC_002965
TCONS_00005469 mRNA upstream 1092780 38430359 ~ 38456382 (-) False XLOC_002967
TCONS_00005438 other downstream 651756 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005427 other downstream 831939 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 1170976 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 1679916 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 1713821 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005456 other upstream 14901 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 714073 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 734498 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 736733 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005467 other upstream 953308 38290887 ~ 38316070 (-) False XLOC_002965

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_18010568_18011800.mRNA True 1581 mRNA 0.48 1 CI01000304 18010254 ~ 18011834 (-)
bowfin (Amia calva) AMCG00005523 True 2525 mRNA 0.48 2 CM030142.1 3648847 ~ 3652715 (+)