RNA id: TCONS_00006102


Basic Information

Item Value
RNA id TCONS_00006102
length 2310
lncRNA type sense_over
GC content 0.33
exon number 1
gene id XLOC_002959
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37485403 ~ 37487721 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGATTTTGGTATAAATACGCTCGTCAGCTGGCTCACCTGTTTGCCAGTTCGATAGTTTGCTAAGTTCTCCGATAATAACGTCAAACAAACAAACGCCCCAAACACTCGATGGGATCCACGCCGTTTACCGCCAAAAAGCTTTTTGGCCTGAGGTCGACACATCATCCTCAAATTCACACCAGGAGTTTGAGACCCATCTGTAAAGCAGCTTACAAAAGGTAATTATGTTCGTTTGTGTTGTTGATAAACGTAGTGGTGTTGCTAACCTGCAGCCCGGTTTGAATTGAGTAAAGTTTTGTTTGTGAAAATAGCTTTACATTTTAATAGGGTAACGTTATATGccaagctagtgtttttcccaaactgataaacttctggtgacctgttattgtgaactttatTTCGTTTTATACGGTTTTCTTTAcagtatcgatgttgtaatgtcattaaatacattcagttaaataaactttggcatttatttagttgctcaagcgtaaaacgagacaaaagccGTTTgttcgcacgcgcccgtcagaatcggcaggctaactcAGAAGCTCTATTGATATACTGagataaaataaatgctcataatataaagacatggcggggtaacatgtaatttaatgaagtgcttcttgtacaatctgagacccactttaaatcggatatcactcagccagtggaggtcgctgatttttaaaggaaacagatgtaccgattttgcattggcattcaattcgccggaagcgcttaacccaggttactggttaattaaaagtcctattagcatgttCATATgacttaaatcatttttataataagagcatttattttaccccagtatattcaatggagcttttgcgctatcctgccgattctgacgggcgcgtgcgagcaaAAGGCTTTATTCTCGTTTTACGCttaagcaactaaataaatgccaaagtttatttaactgaagttattttaatgacattgcaaaatcgatactgtaaaaggaaccgtataaaacagaaaaaagttcacaataactggtcaccagaagtttatcagtatgggaaaaacagtagctcggcatataccctattgaatTCTGCTTAATGTTTAGCCTAAATGAGAAACTGTTATACTAGTTTGCTtcgttttaaagagtttttgtgATACACTCAGTCGATTTATCGTCGTCATCCAGACAGTGATTGTCGAGTGAATGTTGAATTAAACTATCTATTTGTATATGCGGATGTGCTGTCGAGTGAATGttgaattaaacattatttatttgtatatgcgGATGTGCCGCTTTTTTAATAAACTAGATTCAGGGTGTGTTTGTTAATATTTGGGGTGTTTATGACcccatataaaatataaaaatatatataaaaatatataaatatataaaaatattcaaatatgaatccttgcatttactaatttaagtggttgtaaacaatttattcgggctgaatttaaacaaactaagttgaacattactaaatttactttgtttaaattcaacacataaattgtttgcagcatttttttttcagtgtacacaacgatcagtgttgccaactatttccaagAGGAGGGGAGACTGCAGACTTGGATCCAGAAAGATCTATGGCCTAAGCAACCAGAACTATACCACACTCAACCATAATTGCattcaattacatttaatataatgcaataatgTTCTAGTTTAAACAGTTAAACTATCATATAtctataaatgcaaaaaaaaactcacaattttAAATGGTCTACTGATTTTTATTTAGCTATACAGTGCATTTTGTATATTAGCTATGAAGTTTGCATTGCACATGCATTCATATTGTTTCACtgattgttttataatatttattgtaacCATTTGTttcaaagaaaataataaaatatggaaAAGTTGGTATCACAATTTGTagctgcaaataaaaaataaataataatgacttGGTCCTTTTGTTTTACCTTGTTATAATTCTTaaagaataaatcaaatatattaaaaaatattttgatgtttCGCATAGATCCAGATAATATATAAAATGGcatgaaatttattttattttttttgcttttcatttgccAATCTGTACTGTTTCTGAGGATTAAGGattttagatatttggtctagaaacaagTCAATTTTAAGTGCGTAAAGGATTTTGCAGATTATTTATacataactttgtttatttttcagtgaGCATGAAGAATTTGATGCAAGGATTCAACttcatttaaagaaaacagccaATCTAGTGATATTGTTGTcaataaatgaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005774 lncRNA downstream 9167 37418234 ~ 37476245 (-) True XLOC_002958
TCONS_00005454 lncRNA downstream 443180 37041078 ~ 37042232 (-) True XLOC_002955
TCONS_00005450 lncRNA downstream 664589 36819377 ~ 36820823 (-) True XLOC_002952
TCONS_00005446 lncRNA downstream 677752 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005437 lncRNA downstream 802890 36679548 ~ 36682522 (-) False XLOC_002946
TCONS_00006103 lncRNA upstream 241590 37729311 ~ 38025967 (-) False XLOC_002960
TCONS_00006104 lncRNA upstream 290765 37778486 ~ 38025886 (-) False XLOC_002960
TCONS_00005775 lncRNA upstream 377698 37865419 ~ 37889561 (-) True XLOC_002961
TCONS_00005776 lncRNA upstream 532735 38020456 ~ 38025796 (-) True XLOC_002960
TCONS_00006106 lncRNA upstream 541639 38029360 ~ 38118408 (-) False XLOC_002962
TCONS_00005455 mRNA downstream 147833 37334270 ~ 37337579 (-) True XLOC_002956
TCONS_00005452 mRNA downstream 410051 36950773 ~ 37075361 (-) False XLOC_002954
TCONS_00005453 mRNA downstream 412636 36953619 ~ 37072776 (-) True XLOC_002954
TCONS_00005451 mRNA downstream 557818 36828069 ~ 36927594 (-) True XLOC_002953
TCONS_00005449 mRNA downstream 659834 36813090 ~ 36825578 (-) False XLOC_002952
TCONS_00005464 mRNA upstream 680437 38168158 ~ 38243851 (-) False XLOC_002964
TCONS_00005465 mRNA upstream 683320 38171041 ~ 38243579 (-) True XLOC_002964
TCONS_00005466 mRNA upstream 768835 38256556 ~ 38316134 (-) False XLOC_002965
TCONS_00005469 mRNA upstream 942638 38430359 ~ 38456382 (-) False XLOC_002967
TCONS_00005470 mRNA upstream 942638 38430359 ~ 38498072 (-) False XLOC_002967
TCONS_00005456 other downstream 128109 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005438 other downstream 802898 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005427 other downstream 983081 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 1322118 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 1831058 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005460 other upstream 563931 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 584356 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 586591 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005467 other upstream 803166 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005468 other upstream 888413 38376134 ~ 38376253 (-) True XLOC_002966

Expression Profile

//