RNA id: TCONS_00005464


Basic Information

Item Value
RNA id TCONS_00005464
length 7474
RNA type mRNA
GC content 0.46
exon number 26
gene id XLOC_002964
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38168158 ~ 38243851 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttgtgtgctttataaTTGTTTTGAAACCCTGCAATTTGCTGGTTTACATTGTAACATCTTAGATTATAAGCTATATTATATACAATGCAGGCCACCAGTAGATCTTTTGTGAAGTTTTTATTGATCATATGTTTTGCTGCATTGCTTGGATGCGCATTGTTTTGTTTATCCATGTATGAATGTGTGCGAGTAGGGGTGTGTGTTTACTCCACCACTATGACGTAAGGGCGCGCGCACGCGTGTGTGATTCAGACCCAGCTAATGGATGTCAGAGATGTCAGATGTGACTGTACTGCTCGTGTTCGTCATGGCGCCGTTGCAGCGCGGATGAGAGTACAGGCTTTTTCGTTTTTAAACTTTCCTGTTGAGCTCGTAGAACTCCTGTATGCTCCATTTTTACCGTCAAATTTGAGTCCTAATCGCCTGCATCGGAAGCGGCCATGACCGTGGAGCAGAATGTCCTGCAGCAGCACTCTCAGAAGCACCAGCAGACATTACTGAACCAGCTGAGGGAAGTTACTGGAACTACAGATGTTCAACTGTTACAGCAGGCACTGCAGGTCAGTAATGGTGACCTAGTGGAGGCTGTTGCCTTTCTCACTGAGAAGAACGCCAAGGTCCCGCAGCAAGATGAAGCCACCTATTACCAGACGGCCCAAATCACCAACGACAGATACATCAGCGTGGGCAGCCAGGCTGACACAAATGTAATTGACCTGACTGGAGATGATAAAGATGACCTCCAGCGGGCCATCGCTCTCAGTCTGGAGGAGTCAAACAGAGCCTTCAGGGAGACGGGCATCACCGATGAAGAGCAGGCCATCAGCAGAGTCCTGGAGGCGAGCATCGCAGAGAACAAGGCCAGCCTGAAGCGAACACACACTGAAGTGTGGAGCGATTCACCAAACCCTCACGAGCGCAAGAGAATGGAGAACTGTCCTGTAGGACTGAAGAATGTGGGAAACACTTGCTGGTTCAGTGCTGTTATACAGTCTCTTTTTAACCTGCTGGAGTTTCAGAGGCTGGTGTTGCATTATTCCCCTCCTGCACGGATGCAGGACCTGCCCCGCAATCAAAAGGAGCACAGGAACCTGCCCTTCATGCAGGAGCTTAGGCATCTCTTCTCCTTGTTGGTGGGCTCCAAGCGGAAGTATGTGGACCCGTCCGGGGCCGTGGAGATCCTCAAAGATGCCTTCAAGTCCAGTGAGTCTCAGCAGCAGGATGTGAGCGAGTTCACCCATAAACTTCTGGACTGGCTGGAGGACGCATTTCAGATTAAAGCAGAAGAGGACAGGGAGGGAGAGAAACCCAAGAACCCGATGGTTGAGCTGTTTTATGGACGTTTCCTGGCTGTGGGCGTCCTGGAGGGAAAGAAATTTGAAAACACTGAGATGTTTGGCCAGTATCCTCTCCAGGTGAACGGCTTCAAAGATCTACACGAGTGTTTAGAGGCCGCCATGATAGAGGGAGAAATCGAGTCTTTGCATTCTGCAGAAAACTCCGCCAAATCAGGCCAAGAGCATTGGTTCACAGAGCTTCCACCCGTTTTGACCTTTGAACTGTCCAGGTTTGAGTTTAATCAAGCCTTAGGCCGACCTGAGAAGATTCACAATAAGCTCGAGTTTCCTTCTATGCTGTACATGGACAGGTACATGGACAGGAACCGAGAGATCACACGGATAAAGCGAGAGGAGATCAGAAGACTAAAGGAGCACCTCACCGTCCTCCAGCAGCGACTCGAGAGATATCTGAGTTATGGCTCGGGGCCCAAGCGCTTTCCTCTGGCTGATGTTCTCCAATATGCCATGGAGTTTGCGTCCAGTAAACCAGTGTGCACGTCTCCAGTGGAGGACATTGATACAACAGCACCACCTGGTGGCACAATTGCGCAGCTGCCACCGCCAGCAAGCGCAGGGGAACAGCCGGATGCGTGCGTCTCAGCCGAGGGCTCTGGTTCTGGTCTGCAGGCTTcgcaacagcagcagcagaggGTTTCCATCCATAAACCGTTCACACAGTCCCGAGTGCCGCCGGATCTGCCCATGCATCCCGCTCCTCGACACATCACTGAGGAGGAGCTGCGGGTGCTGGAGAGCTGCCTGCACCGCTGGAGGAGCGAGGTGGAGAACGACACCAGAGATCTGCAGGCCAGCATATCCAGAATCCACAGAACTATCGAGCTCATGTATTCTGACAAGTCTATGATGCAGGTGCCGTATCGACTACATGCTGTTCTGGTCCACGAGGGTCAGGCGAATGCTGGTCACTACTGGGCCTACATTTATGACCGACATCACCAGCGCTGGATGAAATACAACGACATTGCAGTGACAAAGTCATCATGGGAAGAGCTAGTGCGGGACTCGTTTGGTGGATATCGTAACGCCAGCGCATACTGCCTCATGTACATTGATGATAAGAAACCCTTCCTTATTCAAGAAGAGTTTGATAAAGAGACGGGACAGATGCTCAGTGGTTTGGACAAGCTTCCTCCTGACCTGAAGGTGTTTGTGGAGGCAGATAACAAGCTCTTCGAGAGGGAGATGGAGGAGTGGGATGCTTTACAGGCCCGCAAACTCCAGCAGGAAAAGTTGGCTCTGGCTGCTGCTGCTGCGGCTGCTGCCGCCGCTAGTGTGGCCGTCCAGCCCATGAGCACTGAACCCTGCTCTCCAGACAACACAGCTCCTCAGCATGACCCAGAGTACATGGAGCAACAGTCGCCCAGCGGAGACTCCAAACACCTGCAGGAGGACACAGAGAGAGCCATCAGCAAGGCTGCAGCGGAGCATGATGAGAAGAGTCCAGAAGCTCTGCTTAATACATCTCAGTCATCTCACCCTGACAGCAAGCTGACCTCTGACCCCTGCCCTCCTCCTGACCCCGAGCAGGACGACCCCACCTGCCCTCCACCCGGCCCTCAGCGGGTGGTGGAGGTGGCCATTCCTAATGTAGGGACCTTCGTCATTCAGTCGAAGGAGGGAGGTTATGATGACGAGGCGATGATGACCCCAAACATGCAGGGTATCATAATGGCCATTGGCAAATCCAGGAGTGTTTATGACAAGTGTGGGCCTGAAGCAGCGTTCTTCAAGGCGATGAAGGTTGAGTACACGCGTTTGCTGAGGCTTGCTCAGGAGGACACGCCGCCCGAGAGAGACTACCGGCTACAGCATGTCATTGTGTTCTTTATTCACAATGAGGCGCCCAAGAAGATTGTGGAGAGAACATTGCTCATGCAGTTTGCTGACAGAAACCTTGGCTTCGATGAGAGGTGTAAAAGCATCATGAAAGTGGCACGTGCCAAACTGGAGCTCATCAAGCCTGATGAGGTGAACTTGGAGGAGTACGAGATGTGGCATCAGGACTACAGGATTTTCCGTGAGACGTCAGTGTTCCTGTTGATCGGCCTGGAATTATTCATGAAGAAAAGTTTTGTGGAAGCGTTGATGTATCTGATCTACGCCTATCAGTACAACAAAGAGCTTCTGGCGAAAGGGCCGTACAGAGGCCATGATGAGGAGCTGATCGCACATTACCGCAGAGAGTGCCTGCTGAAGTTAAATGAATACGCTGCCGCTTTGTTCGAGACGGGCGAGGAGGCTAAAGTGAACACGGGTCTGAGCATCATGAACGATCTGGTGGTGCCCTGTCTTCCTCTGTTACTGGTGGATGAGATGGAGGAGAAGGACATGGTGGCTGTTGAAGACATGAGGAACCGATGGTGCTCATACCTGGGCCAGGAAATGGAGCCGAATCTACAGGAGAAGCTGACCGACTTCCTCCCCAAACTGCTGGACTGCTCGACCGAGATCAAAAGCTTTCACGAGCCGCCCAAACTGCCCTCTTACTCCACGCTGGAGCTGTTCGAGCGCTTCGGCAGGGTCATGACGTCCCTCACTATGGGTCGAACCCCTGCAGATGGCAGATGAGCGGCGCAGACTTCATCTCCTCTCCACTAACACACACACGCCTTCCTTAAAGCAGGACTTTCCCAAACCTGCTCACCTTTCCTTTCACTTTTGCTGCTAGAGATTTTATCCTTattggtattattaatattatttctcgAGGATTCTGTTATGTTTTACAGCTAATGCTACAGTAAGGATAGCGTGAAGCTGAGCAGAAGCTAAGAAAGAATGCATTCgatggatagttcacctaaaaataaatgttataaaggATTTGAAGGTAAATGAATAACAAGTGATGATTTTCGTGTGAACTATCCCGGGTTTCATGGTGGTGCTTTAGACATTGGCGCATGCAGCTTTAGCTTTGTGAAACGAGGTTGAGGATTCATTTCAATATTTGGTTTTAAGTTTTATCCCCTCCCCTTCGTTCCTTTTCACACCGGAAGCAGATCGACCGGCCGCACCGCCCTCGTTTTGTTACAGTGTTACcacatttttttttcgtttggttttgtttttctaAGGACGGTGAGACAAAAAGCTGGAGGTTCTCGGATGGGTCTGCCCACCAGACGACCGGGACTTCAACACAAGTTTTAAGTGCTGTGGATGGCAGCCATGGGACATACTGTGGCTTGTTAATACATTGAgagaataaaattttatttatggcTCTTTTAGGCcagatacatatttttttaaacgtTCCTAATCTTTATTGAACTTCGCATTGAATGAAACTGTGCTGTGCTACTTTGGGTATCTCAAAGAGAACAGAGTatgttttttccccattttgaCTTCACTTAAATCCTTTTTTAGACGCCTCGAGTTTGGTTTAGCATAAGAAGTTTCATTGATACTGAAAAAGCCAGGTATTGAATAAAAAGGCACAAACACTACTGCTTTCCCAAAGAAAACCGATAAGAACACTACCACACAGTCTTTTACAGGTCATTGCAGTGCATTCATAGTGTGCAGAGTGAACATGCTTTGTTTAAAGAGAGATTTGATGCCAAGCATCAATTAGATGTGAAAGTTTAGTGTTCAAAATGGTGGGAAATTCTTTGACGGATGCACTCAGCATTACCATTGTATATAGTTACACCCTTATGTTTATGTCAAgagtgtgaattttttttcccctacttccctttttttttttgttgatcagAGCAGCTTGTTCAGCGCATTTGACTTTAAAGGCTATTAAACGAAGctgacacaaataaacaaaccaaaacccAGTGTAAATGCATGGTTCTCTTTGATTTCATACACCGATTCTCACAGATTGGGTGAGGAGCCAGTGATTAGCCATCTGCCACAACTATTCTGTTATTGCGcttgtacagttgaaaccagaagtttacatgcactgtataaaagggcacataaccattaaaaaaagtctCATGTTAATGTgattaaactttttctcttttaggtaagtcaggattatcaaatgtgtttctgttatgcttcatagcagaataatgagcgagacattttttgagaaattgttatcacttttcttgaaagtcaagtttacatacaataagattattatgcctctgaaaaagctcagatgatggtgtcgaggttttggaagtttccgattggctaattgacaaaaTCTGAGTTAACTgcaggcacaactgtagaatagtattaaaggaaaacctcaaacacactgcttccttgtgtgacaacatgggagaatcaacaagccagaatcaacaaaaaagccagattacaattagctaaattacactgggaaaacgaagaatttttggagacatgtcctgtggtctgatcgaactaagattgaactgtttggccataatgacctgTTACACATTTGGAGgtcaaaggggaaagcttacaaagctcacaacaccatcccaactgtgaaatatgggggcggcagcatcatgttgtggggctgttttgcttcaggagggactggtccacttctaattatagatggcatcatgaagaaagaacataatgtagaaatactgaagcaacatctcaagacatcagccaggaaattaaaacctggccacaaatgggtctttaCAACAGACCATAACCCTAAgaatactgccaaattagttaaaatgtgctttaaggacaacagagtgaatgttttggagtggccatcacaaagccctgatgtcaatcctatagaacatttgtgggcagagttgaaaaagcttgtgcgagcaagacagccaacaaatctgagtcagttacaccaattctgtcaggtgGACTGGGCcctttaaactattgtgagaagcttgtggaaggatacccaaaacatttgctCAAAGTTATACAATTTagaagcaaagctaaaaaaaaaaacaaacaaacaaggaaatgtatgtaaacttttgactgtctagaaattatttaaaaattctccaaaaaaaaaaagtcattattctggcatttagcaaatgtaaatcatttgggTAATCCTAACAgaactaaaatattaaaagtttagtatgatttaccatcaaacttttaaaaaaatggttatgttcgtTCTTTTAGAGAATGTGTACACTTCTGTTTCATGAATGATTTGGAttcctgttgttttttttgttttgttttttattcaggaCAACATGGATACAATTCCAAGAAGATGTCTTCAGAAACCTGAGAGCTAGCTTTCTAGGAATGGTTTTATTACAGTACATATCTACCAGTGCTGTGCACTCAGTGACCCATATTGGAGAGTAATCAGGTCAGTGGTGAAATGCACAGCAGTGCTTTATCACAAGATTAACCAAAGACTTGTTTGCAACACTGAAAGGAGTGAGGGAAATGACTGAAGGCACTAAATAACATTTCTTCTAGTATGTACATGAACCTCTTGCAGTTTTcaatgcatgtttttttctgtagcatttttacaatgtagattgtgtcaaagccgttTAACATAGAACATTATAATAAATTGaatgtgtcagttcagttttcagagttgaacttcagtttagttcagttgagtgtgtttaattttcactgctaaaagtccaaacactgaagagcaaatacatCAATGTGCAGCTTCagaagtcccaaaccaagcaagccagtgactacagtggcgaggaacaaacttcaaagaaagaaagaaaaacttgagagaaaccaggcttagttgggcacaactatttctcctctggccaaacttcctgtgcagagctgcagtctatgcTCTGAAGAAAGCTGGACGTCCATCTTGGAGAAGCTGCAGGATCAATGCAAAGACTCATCTTATGCTCTCCGCTCATCCATGACCACCAcaacatctgctcaggatacagcctggtccaggattatagataccttggcatcatttcttcacaggtAAATCGCATTAATGGTGCTGCgtaatctctagaggcctcgggaGGAGTATCGCGAGATGGAAGTAGAGAGTTGAAAAAATGATTAGCGTTAATATAGTTAGTTTTCTGTAAACCAGATCCAGCCTGAAAGCCCAACTGCTGCATTAATATGAAGGCA

Function

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko04657 IL-17 signaling pathway
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-2847 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development and dorsal/ventral pattern formation. Predicted to be active in cytosol and nucleus. Orthologous to human USP25 (ubiquitin specific peptidase 25).

Ensembl:

ensembl_id ENSDART00000166108

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005462 lncRNA downstream 80 38073682 ~ 38168078 (-) False XLOC_002962
TCONS_00005777 lncRNA downstream 17922 38036466 ~ 38150236 (-) False XLOC_002962
TCONS_00006114 lncRNA downstream 17950 38029360 ~ 38150208 (-) False XLOC_002962
TCONS_00006113 lncRNA downstream 17957 38029360 ~ 38150201 (-) False XLOC_002962
TCONS_00006112 lncRNA downstream 17957 38029360 ~ 38150201 (-) False XLOC_002962
TCONS_00006118 lncRNA upstream 69772 38313623 ~ 38316161 (-) True XLOC_002965
TCONS_00006119 lncRNA upstream 169079 38412930 ~ 38430658 (-) False XLOC_002967
TCONS_00006120 lncRNA upstream 169079 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00006121 lncRNA upstream 268057 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00005474 lncRNA upstream 268057 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00005458 mRNA downstream 680480 37485403 ~ 37487678 (-) False XLOC_002959
TCONS_00005455 mRNA downstream 830579 37334270 ~ 37337579 (-) True XLOC_002956
TCONS_00005452 mRNA downstream 1092797 36950773 ~ 37075361 (-) False XLOC_002954
TCONS_00005453 mRNA downstream 1095382 36953619 ~ 37072776 (-) True XLOC_002954
TCONS_00005451 mRNA downstream 1240564 36828069 ~ 36927594 (-) True XLOC_002953
TCONS_00005466 mRNA upstream 12705 38256556 ~ 38316134 (-) False XLOC_002965
TCONS_00005469 mRNA upstream 186508 38430359 ~ 38456382 (-) False XLOC_002967
TCONS_00005470 mRNA upstream 186508 38430359 ~ 38498072 (-) False XLOC_002967
TCONS_00005471 mRNA upstream 189240 38433091 ~ 38443312 (-) False XLOC_002967
TCONS_00005473 mRNA upstream 204423 38448274 ~ 38468847 (-) True XLOC_002967
TCONS_00005463 other downstream 93767 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 95990 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005460 other downstream 116392 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005456 other downstream 810855 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005438 other downstream 1485644 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005467 other upstream 47036 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005468 other upstream 132283 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005472 other upstream 190532 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005497 other upstream 2131159 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 2139931 40383782 ~ 40384432 (-) True XLOC_002985

Expression Profile

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