RNA id: TCONS_00005499


Basic Information

Item Value
RNA id TCONS_00005499
length 651
RNA type unprocessed_pseudogene
GC content 0.41
exon number 1
gene id XLOC_002985
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40383782 ~ 40384432 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACCTAACAGACGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAGGGGAGACGCTCAAGTAATGGATATAACATCATCTATGTGTTTGTGTCATTGTTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTTACTGATCTGCTTGTTGGACTCGTCATGCCTGTAGAGGCCATCAGACTGACTGAGACGTGTTGGTATTTTGGAGACACTTTCTGTGGgctctattttttatttcttgcATTACTTCTCTCAGCATCTCTTggtaatttagttttattagcTGTTGATCGTTATGTGGCTGTGTGTCACCCTTTACTGTATCCACAGAAAATAACCACCACTAAAACGTTAATGAGTATCTGTCTGAGCTGGGTTTGCTTGTCAGCTTATAATACTGCCATTGTAATTAATAATGGATATTTTAACATGATTATTCTCTCTCTGGCTATAAATGATCTGCTTATTGGACTCGTCATGCCAGTGGAGGCCATCAGAGTGATTTAGACGTGTTGGTATTTTGGAGACACTTTCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148151

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 1293694 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1719548 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1857072 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 1868251 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 1952687 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 105205 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 113727 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 236549 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 466705 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 983676 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005498 mRNA downstream 3646 40378761 ~ 40380136 (-) True XLOC_002984
TCONS_00005496 mRNA downstream 17385 40365342 ~ 40366397 (-) True XLOC_002979
TCONS_00005495 mRNA downstream 23147 40359577 ~ 40360635 (-) True XLOC_002982
TCONS_00005494 mRNA downstream 31532 40351198 ~ 40352250 (-) True XLOC_002981
TCONS_00005493 mRNA downstream 35650 40347080 ~ 40348132 (-) True XLOC_002980
TCONS_00005500 mRNA upstream 2778 40387210 ~ 40388265 (-) True XLOC_002986
TCONS_00005501 mRNA upstream 11870 40396302 ~ 40397363 (-) True XLOC_002987
TCONS_00005502 mRNA upstream 17426 40401858 ~ 40402904 (-) True XLOC_002988
TCONS_00005504 mRNA upstream 20851 40405283 ~ 40406314 (-) True XLOC_002990
TCONS_00005505 mRNA upstream 25400 40409832 ~ 40410884 (-) True XLOC_002991
TCONS_00005497 other downstream 7786 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005472 other downstream 1949283 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 2007529 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 2067712 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 2309391 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005503 other upstream 19562 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 34375 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 83940 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005525 other upstream 132317 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005526 other upstream 136391 40520823 ~ 40521100 (-) True XLOC_003010

Expression Profile

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