RNA id: TCONS_00005504


Basic Information

Item Value
RNA id TCONS_00005504
length 1032
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_002990
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40405283 ~ 40406314 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagcagaacaaactcctaACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGCCATCAACTCATCATGTGTTAAAGGACGACACTCAAGTCATGGATATATCGCATATTTGCTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTGACTGATCTGCTTGTTGGACTTCTCATGCCTGTAGAGGCCATCAGACTGATTGAGACATGTTGGTATTTTGGAGACACTTTCTGTGGActctatttattatttgttgcattACTCCTTTCAGCATCTCTTGGTAATTTACTTCTAATTGCTGTTGATCGTTATGTGGCTTTATGTCACCCTTTACTGTACCCACAGAAAATAACAATCACTAAAACTTTAATGAGTATCTGTCTGTGCTGGTTTTGCATATCAGTTTATAACACTGCCCTTGTAATTAATAATGGGAATTTGGACACTTTAAACAGAAAGGATGAGTGTTATGGAGAATGTTTCCTCATGATAAGGTTTAGTTGGATAGTCATTGACCTATGTGTTTCATTATTTTTTCCTTGCACCGtgatcattatattatattccaGAATTTTCTGTGTTGTTCATCGGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAATGAAGAGTTCAATGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACATTAGGAATAATCGTGTCAGTTTATCTACTTTGCTATATCCCATATTGTATCTGTTCTCTAACAGTCAACTCTTTGACAGTACTGAATGTCTTAATATGGCTTCTGTATGCTAGTTCAGGTCTGAATCCTCtggtttatgctttattttactcCTGGTTTAAAAAGACAGCTAAAATCATTTTAACTCTGCACATATTTCAGCCGGCATCCTCTCTGATCAATATTTTTacagaacattaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060414-5 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000156945

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 1315195 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 1741049 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 1878573 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 1889752 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 1974188 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 83323 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 91845 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 214667 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 444823 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 961794 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005502 mRNA downstream 2379 40401858 ~ 40402904 (-) True XLOC_002988
TCONS_00005501 mRNA downstream 7920 40396302 ~ 40397363 (-) True XLOC_002987
TCONS_00005500 mRNA downstream 17018 40387210 ~ 40388265 (-) True XLOC_002986
TCONS_00005498 mRNA downstream 25147 40378761 ~ 40380136 (-) True XLOC_002984
TCONS_00005496 mRNA downstream 38886 40365342 ~ 40366397 (-) True XLOC_002979
TCONS_00005505 mRNA upstream 3518 40409832 ~ 40410884 (-) True XLOC_002991
TCONS_00005506 mRNA upstream 8748 40415062 ~ 40416084 (-) True XLOC_002992
TCONS_00005508 mRNA upstream 13738 40420052 ~ 40421059 (-) True XLOC_002994
TCONS_00005509 mRNA upstream 22381 40428695 ~ 40429747 (-) True XLOC_002995
TCONS_00005510 mRNA upstream 36380 40442694 ~ 40443746 (-) True XLOC_002996
TCONS_00005503 other downstream 952 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005499 other downstream 20851 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005497 other downstream 29287 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005472 other downstream 1970784 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 2029030 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005507 other upstream 12493 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 62058 40468372 ~ 40469394 (-) True XLOC_003000
TCONS_00005525 other upstream 110435 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005526 other upstream 114509 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005531 other upstream 131126 40537440 ~ 40538047 (-) True XLOC_003015

Expression Profile

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