XLOC_002969


Basic Information

Item Value
gene id XLOC_002969
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38511908 ~ 38526710 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006121
GGTTGCAATGCTGCTCAGGGTCTTGTTTGCGCTCACAGTGGCCAGTAGGCACAGGAGAAGCACGTTTGACGCCAACATGATTTTAGAGGTAAGTTTACAGCCTGCAAAGGTGGCAGAGAACTAATCAGTGAGGTTTAAAGgttaaattcaaataagaatTTTAATAAAGTGTAAGTAAATCATTGTAAACCATTGTAATGCCTTATTTCCACTGAGCACTACGGTTCAGTACAGTATGATTTAATACGGATCACGCTGATCAGGCTTGCCCTtcatgttaaaaggagtttttgtcgaAACCATCTGCAACATTCATGCAgataatttctattttagaacATCTTACTATTTACGCGATGTCACGGCAGAACAACAGCATctactactatgacaatgatcacctcaggtactgattatgggctttattcagtgttaaatgcccCCAATGTGAGCTTAAATACCAttttgtgacatttattgccatactactaaaagcagcagcaggtaGTTTACCTCAGATGTTGAAAATAAAGTAACTAGCAGacggtttgaaaatgaaagtaagAACTGTGACAACATCAGTCCCTCAGTAGCCTATTAATAATGTAAAAGAGGTCAAATAGGTATAAATCGGTATTTAAATGTTTCGGTCACGTCGCATCGTGTTTGGTGCAGACAGACAAATTGCTTGTCACTGGAAACTTGTCGCTTCGTATGTTGTTAGGACACGTTGTTACTTGGTAGACGTGCTGTACACCAGACAATTGTGATCAACGTCATTAGAAATAGATAGCTCTATGGATGTGTTGACCTGCAAATAGAGAAAGGAAACAGCACCTCTTGTGCTTTCCacatttacagcaaaaaaaaaatgtgtaactgTACTGTATcaaactgtaccactcagtggaaacaggccaaaaagctgtggtcacactgcactttttgccccatagacttccattcatgcaCATGCCAATGTGGCAGACATGTATAAAATGCAATTATATTGCAATAGgaatataatgcaataaaaatacaatGCGATAAAAATTATACTTGTAATTTGAAGTAGGAAAAAAGCATAATatttactaataatactaataaaacgtttgtattattgaaataaatgttgATTGTTACCACCGAATTGAACTTGCAGCTTCATACGGAAATGTAAGCGTATGCATCAGGTTTAGCAAAACGTGACACCTCAGTACAGAAATGTAATATATGAACCAATATAAAGATCTATTTTGCAGTGTTTTACTCTTGGaggctctctgattggtggacttTTTGCACAACATCATGGGTAGTGTGATCAATTTGATCTTAAACTTGACAATGAAAAGAATTTTGAACTTCCAGATCCTGACTGTTGTGTTTCACACACATCACTTGTATCAAGTTTTGTTATTTGTCATTCATTTTTCTGTTCTAAATACAGTTTTAGgttgatttaaatatatttatattcattttatttaaaattacttgTAGTCTGTTTGacattattactgtattttattttcccCTAATAATCTAATTTTACCCTGTGCAATTTATTATAGAAATGCAGTAAGTAAGTGATGGTTTTCTCTGTGTAGAGCTGTAGACTGTGCTCTGACCACAGAACTCTAAGAAGAGCCAAGATCTATTAAAGCTGTAATTTGAAATCTCCACTGACTTTTAATGACAGGCCTGCTGTGCTAAAGAAGGTCCAGCAGATATACAAGGCAGAAGAATTACATAACTGCCACGTGCACAGTTGAAACATACACTACACTGTCATATGAATGAGAAGTATTAACTGTGGTTTTAACAGTTTACGTTGCTGTTAAAGTTTTTGAATGCTTCTTTTGCCCACCATAGTTAGATGatgtttatttaatcaaaaatacagcaaaaacattaaaattatttaatatttttatatattttaaattatacagttgaaAACGATTAGCTCTTTAAAattttaattcctttttttttatatttcccaagtgagGTTTAATTGGACCAATGACaccttcacagtatttcctatcatatATTTTCTTCcagggaaagtcttatttcttgtttttttttttcttttttatttaaatgtaaagaacAATACTATTAACCCTTCTGATAACTATAGTTAAATTAGTCAAATATTGTAtgctgtaatcatggcaaagacaaaagatatTAGTTATGTAAACTGTTATGttcaaaaatgtgttgaaaaaaaaaactcttaaataaacaacatttgggaaatattgttaAAACAGTAGAACTTAGTTattaaatttcacaggagggctaataattttgattgtgtatcatttatagcatttttttattgtaacatgATGCTTCAGTAAGCATTACATGCTGATATgcttttaaagaattatttttattatgaattatCCTTTATAAAATGTTGTTACAAAAGCCTTTCAGGACagtttgatgaatagaaagtttGCTAGAACACCATTCTTTTCAAATAGTATTTTTATCTCTTGATCAATTTAATGCCTCCTTACTTAATAAAAGTTCCCCAAAAAAGGTTAAAAGTTTTCAAAGTTCAATAGCAAAGAAATTGGCATATACTCAAGATGCACAGATCTTTTCTTAAAAAAGGGTTATAACAGCCACACATGCAGATTTCTGGGATCTGAAGTCATTTTACGCTGGATAACCGTTATCCAATCAGCACTGCCAGGATGGCAGGAAGCTCAACAGTAGTGTGGGAACATCAGACCTCAGAGATCCTGCAGATCCACTCCACCCTAATCCCATTGAATGGCTTAAAATGTAGCCTTCAGGAATGCAAACTGCATTAAATCACAGCCTTTCATTGAATGACTTTTATTATGCCTTTAGGCAAGCCTGAGACAGTTAAACAGTCAAAATTCATTTATGAACTGATATCCAAAGCTGCATTTGCTTATGGGACATTAAAGTTAAACTAGTTAGAAAGTACTCAGAACGAAACATTCCCAATGAAGGATTCTGCTTTGGCATGCTGcacattctttgcatttttccCGTGCTGCATTAATTCAACAATGTCCATTTGTTTTCACAGCTACTGTATAAATGGCATCTGTTACTCACCTCTCAGAGCTCCTGAAAAACCTCTCTACAACCTCTCGGATATGCCGACGTGCCCACCACCAAATCCTTCACGTAGACTTTATAGATGGGAAAAGAAACTTCTGGAAGTTAAGAAAGGAGTATTAGAATGGTTGTCGTTGTCTGTGAGAACCTCCCCCCAGATCCAGTTACTGTGAGAACTGGACTCTCTCTCCTCAAGGTCCTAAAGGTAGCAGCAAATGACCAACATTTCCTGCAAACACAAATGACTTCAAAAgcacacaacaaaaaatgctggCTTATTTCAAGATAAATTTGAGTAAAATATGGTCAAACTCAATGGTTGGGTTACATTTGTGTTAAAATTTGTACATACAGTAGCCAAATCTGGGTTGAAATAGTGTGTATGAAAAAAGGTGGATGTAGGCCTAAACATCAGAAATCATAATATCTTAGAATAAAACTACATTTAATTCAGTCTCAAACATGGTGTTTTTATGATTTTGATTATAAAGATGT
>TCONS_00005474
TCCCATAGTAGGATTCAACAGTACTCCTAGCGAACGTTGGAACATCCGTGTTTACGCGACAGTAAACCGCGAGTCCCGAAAACACATAAGCCCACCGCTAAAACGTACTTACAGAATTCTGCGATGTAATAAGAGACCACATAATTCTCCTCGCACCAGTCGAGAGTGGAAGTCGGTGTTCCCCAGTAGCCCGGCCTGTCCGCCGCCGGAGCCATGATGACGGTGATCGGAGAGGTCGGACGGGCGGAGGGAGGAGCTGTTTTAACGGAAGACAAAAGGATGGTCGGCGTAGAAGAGTTTGGGATTTTTCAGCTGGTCTGTACCAAAGATGCTAGTATCAGGCGGATTTCCCTCTGTGTCCCACTCCATGGCTGAGGCATGGAAAACATTGGACAAATAGAGGTCTTTCTTCCCTGAGATGTTGGACAGATCAGCCTTGGCCTTATCCACAGCTTCAGTCAGACCCAGCTCAGCGAGATGTTTCTGTTGTGGCTGACCTCCATGCTGACCTTTGGCAGAGAGATTGCTACTGCTTTCTGTTCCATTGCACTGACCCAGGTGTTCAGTTGTTGACGTGTCAGCAGTTTCTCCACTCTTTCCAGTGATTCTACGTGGTATGGCATGATAAGGACTAAAGATGACATCTTATGGGCCAGCGGCATTTCCAGAACTAAAAGTTTGTTGGTTGTGTCATCAAGGAAGCCATAAATGCCTGGAAGTAAACACAACAGGTGTGATGTTCACTGTATTGTGAAggttcccacgcttcttgaaagtacttgaatgtcagacatatggattcaaggcctggaaagtcaacagtatctggatgcagcctttatgatgcaagcagagactgcatcactcagcaatgcaatGATGATCTACTCTTTTTAATCAAGTCCTCACCTGTGCGGTGCATCATGGGTACGGAGACGGTGAATGACCGGTGCACTAAGAAACCACGATTGTCCACCATCTTATGATGAAACTGCTCATTCCAGTGTGCTGGAGAGAAAACAGAGACACGTTTTAGTTTCTAACGAATCTACCAACTGCCTTTCACTCAAACTTTAATCAACACTTACGTTTATAAAACATGGCATTGATGATCATGGCTCCATCTGTCTTCTCCACATCTTTGGTCACCTCCGGCAGCTTTCCATCGGTGGACTTCGATGCCCAGTCGTTGATGGCTTTCACCGCACTGCGTTTGTCGCGGAAGTTAATTTTGGAGTGGTCGTAATTGTAATGCTTCTTGCTGCTTTTCAGAAAGTCATCAACGAAGCTAACAGAACTGGGCCCGTAGAAGCGGTTGCTGATCTTCCAGGTGACGTTTCGTGCCTTTGGGTTGCTGACCTCGGTGAGGAGCTCCGAAAGCCCAGAATGGAGTTGCTCATCCTTCACTGAAGCGGCGCTCAAGACGGTTTTGACCTGAGAAGCAGTGTTGGATTTTCCTCCAAGAGCCACCAGACCCAGCGATGAGGCCACTACCACTGGGGAAATCAGGATGTTCTCGATGTCCTTATCTTTCGCCATGTTTTGATACAGGTTGAAGGCCAGTGTGGCGCTGTTGTCGGCTAGCGTGGTTGCAATGCTGCTCAGGGTCTTGTTTGCGCTCACAGTGGCCAGTAGGCACAGGAGAAGCACGTTTGACGCCAACATGATTTTAGAGCTACTGTATAAATGGCATCTGTTACTCACCTCTCAGAGCTCCTGAAAAACCTCTCTACAACCTCTCGGATATGCCGACGTGCCCACCACCAAATCCTTCACGTAGACTTTATAGATGGGAAAAGAAACTTCTGGAAGTTAAGAAAGGAGTATTAGAATGGTTGTCGTTGTCTGTGAGAACCTCCCCCCAGATCCAGTTACTGTGAGAACTGGACTCTCTCTCCTCAAGGTCCTAAAGGTAGCAGCAAATGACCAACATTTCCTGCAAACACAAATGACTTCAAAAgcacacaacaaaaaatgctggCTTATTTCAAGATAAATTTGAGTAAAATATGGTCAAACTCAATGGTTGGGTTACATTTGTGTTAAAATTTGTACATACAGTAGCCAAATCTGGGTTGAAATAGTGTGTATGAAAAAAGGTGGATGTAGGCCTAAACATCAGAAATCATAATATCTTAGAATAAAACTACATTTAATTCAGTCTCAAACATGGTGTTTTTATGATTTTGATTATAAAGATGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006397 mRNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006121 False 3624 lncRNA 0.34 1 38511908 38515531
TCONS_00005474 True 2202 lncRNA 0.46 6 38511908 38526710

Neighbor

gene id symbol gene type direction distance location
XLOC_002967 NA coding downstream 13836 38412930 ~ 38498072 (-)
XLOC_002968 BX000451.3 coding downstream 77409 38434383 ~ 38434499 (-)
XLOC_002966 CU914142.1 coding downstream 135655 38376134 ~ 38376253 (-)
XLOC_002965 nrip1b coding downstream 195747 38256556 ~ 38316161 (-)
XLOC_002964 usp25 coding downstream 268057 38168158 ~ 38243851 (-)
XLOC_002970 NA coding upstream 137283 38663993 ~ 38664234 (-)
XLOC_002971 pcp4a coding upstream 442719 38969429 ~ 39011514 (-)
XLOC_002972 igsf5a coding upstream 501621 39028331 ~ 39091894 (-)
XLOC_002973 NA coding upstream 560615 39087325 ~ 39090088 (-)
XLOC_002974 rps25 coding upstream 598927 39125637 ~ 39130935 (-)
XLOC_002962 NA non-coding downstream 343830 38029360 ~ 38168078 (-)
XLOC_002963 dre-let-7c-2 non-coding downstream 439740 38072077 ~ 38072168 (-)
XLOC_002983 AL953903.2 non-coding upstream 1848300 40375010 ~ 40375996 (-)
XLOC_002985 AL953903.1 non-coding upstream 1857072 40383782 ~ 40384432 (-)
XLOC_002989 AL953903.3 non-coding upstream 1877284 40403994 ~ 40404331 (-)

Expression


Co-expression Network