XLOC_002974 (rps25)


Basic Information

Item Value
gene id XLOC_002974
gene name rps25
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39125637 ~ 39130935 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005479
ACTGAACTCTGAGACCGCGCACGCTCCGACAGTCGAAGCGCGCACGTGGACGGACAAAGCGGACGTGCGCGTTCACGACTTCCTTTCTCTTCCGCAGCTCGCAACGCCTCAGCATGCCGCCCAAGGATAGCAAGCAGAAGAAAGATGCGGGCAAGTCCAAAAAGGACAAGGATCCCGTCAACAAATCCGGAGGCAAAGCGAAGAAGAAGAAGTGGTCCAAAGGAAAGGTGAGGGACAAGCTGAACAACCTGGTCCTCTTCGACAAAGCCACTTATGACAAACTGTACAAAGAAGTGCCGAACTACAAGCTGATCACCCCGGCTGTGGTTTCTGAGAGGCTGAAGATCAGAGGCTCCCTGGCCAGAGCTGCCCTGCAGGAGCTGCTGGGAAAAGGCCTGATCAAGCtggtgtccaaacacagagctcAGGTGATCTACACCAGAAACACCAAGGGCACAGACGAGGCAGCTCCAGAAAAGGAGGCATAAACATGGTTCCTTGGCTTGAGTTATGGTCTTTTGTATAGATgaataaaaaccataaaattaa
>TCONS_00005480
GCTCGCAACGCCTCAGCATGGTGAGTGTTCGAGCGGCCCCAAATCCGCCCAAGGATAGCAAGCAGAAGAAAGATGCGGGCAAGTCCAAAAAGGACAAGGATCCCGTCAACAAATCCGGAGGCAAAGCGAAGAAGAAGAAGTGGTCCAAAGGAAAGGTGAGGGACAAGCTGAACAACCTGGTCCTCTTCGACAAAGCCACTTATGACAAACTGTACAAAGAAGTGCCGAACTACAAGCTGATCACCCCGGCTGTGGTTTCTGAGAGGCTGAAGATCAGAGGCTCCCTGGCCAGAGCTGCCCTGCAGGAGCTGCTGGGAAAAGGCCTGATCAAGCtggtgtccaaacacagagctcAGGTGATCTACACCAGAAACACCAAGGGCACAGACGAGGCAGCTCCAGAAAAGGAGGCATAAACATGGTTCCTTGGCTTGAGTTATGGTCTTTTGTATAGATgaataaaaaccataaaatt

Function

symbol description
rps25 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS25 (ribosomal protein S25).

GO:

id name namespace
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-1788 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS25 (ribosomal protein S25).

Ensembl:

ensembl_id ENSDARG00000041811

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005479 False 549 mRNA 0.52 5 39125637 39130935
TCONS_00005480 True 475 mRNA 0.51 5 39125639 39130839

Neighbor

gene id symbol gene type direction distance location
XLOC_002972 igsf5a coding downstream 33743 39028331 ~ 39091894 (-)
XLOC_002973 NA coding downstream 35549 39087325 ~ 39090088 (-)
XLOC_002971 pcp4a coding downstream 114123 38969429 ~ 39011514 (-)
XLOC_002970 NA coding downstream 461403 38663993 ~ 38664234 (-)
XLOC_002969 NA coding downstream 598927 38511908 ~ 38526710 (-)
XLOC_002975 slc37a4b coding upstream 2475 39133410 ~ 39154778 (-)
XLOC_002976 b3gat1b coding upstream 47515 39178450 ~ 39198942 (-)
XLOC_002977 cry5 coding upstream 133867 39264802 ~ 39283883 (-)
XLOC_002978 smtlb coding upstream 183643 39314578 ~ 39321367 (-)
XLOC_002979 taar20i coding upstream 1200256 40331191 ~ 40366397 (-)
XLOC_002967 NA non-coding downstream 627565 38412930 ~ 38498072 (-)
XLOC_002968 BX000451.3 non-coding downstream 691138 38434383 ~ 38434499 (-)
XLOC_002983 AL953903.2 non-coding upstream 1244075 40375010 ~ 40375996 (-)
XLOC_002985 AL953903.1 non-coding upstream 1252847 40383782 ~ 40384432 (-)
XLOC_002989 AL953903.3 non-coding upstream 1273059 40403994 ~ 40404331 (-)
XLOC_002993 BX530037.4 non-coding upstream 1287872 40418807 ~ 40419059 (-)
XLOC_003000 BX530037.2 non-coding upstream 1337437 40468372 ~ 40469394 (-)

Expression


Co-expression Network