XLOC_002977 (cry5)


Basic Information

Item Value
gene id XLOC_002977
gene name cry5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39264802 ~ 39283883 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005486
TGTGGAGGTCTCCATAGTCCAAAGGCGACAACGATGAGCCATAACACCATTCACTGGTTCCGCAAGGGGCTGCGTTTGCATGATAACCCTGCTCTGATCGCTGCTCTGAAAGACTGTAGACACATCTACCCCCTGTTCCTGCTGGACCCCTGGTTCCCCAAAAACACTCGCATCGGCATTAATCGATGGAGATTTCTCATTGAAGCCCTCAAGGATCTGGACTCCAGTCTGAAGAAACTCAACTCAAGGCTCTTTGTCGTCAGAGGGTCGCCCACAGAGGTTCTCCCAAAGCTCTTTAAGCAATGGAAGATCACTCGTTTGACTTTCGAGGTTGATACAGAGCCGTACAGTCAGAGCAGAGACAAAGAAGTCATGAAGCTGGCCAAGGAATACGGCGTGGAAGTTACTCCAAAGATTTCTCATACTCTCTACAACATCGACAGAATTATCGATGAGAACAATGGCAAGACTCCCATGACCTACATTCGCTTGCAAAGTGTGGTGAAGGCCATGGGTCACCCTAAAAAACCCATTCCTGCTCCAACCAACGAGGACATGCGAGGTGTGTCCACTCCACTTTCTGATGATCATGAAGAAAAGTTTGGGATCCCAACTCTTGAGGATCTTGGACTGGATACGTCATCCTTAGGGCCACATTTGTTCCCGGGTGGTGAACAGGAAGCTCTGCGCAGACTAGATGAGCACATGGAGAGAACGaactgGGTGTGCAAGTTTGAGAAGCCAAAGACGTCCCCAAACTCCTTGATCCCTAGCACCACCGTCCTGAGCCCCTACGTCCGGTTCGGCTGCTTGTCTGCACGCACCTTCTGGTGGAGGCTCGCAGACGTGTACAGAGGGaAGACACACTCTGATCCTCCGGTTTCTCTGCATGGCCAGCTGCTGTGGAGAGAGTTTTTCTACACGACTGCCGTCGGGATCCCAAACTTCAACAAAATGGAGGGAAACTCTGCCTGTGTGCAGGTGGACTGGGACAACAATCCTGAGCACCTCGCAGCATGGAGAGAGGCTCGGACCGGGTTTCCCTTCATTGACGCCATCATGACTCAGTTACGACAGGAGGGCTGGATCCACCATCTGGCCCGGCACGCGGTCGCATGTTTTCTGACCCGAGGTGACTTGTGGATCAGCTGGGAGGAGGGCCAGAAGGTGTTCGAGGAGCTgctgctggattctgattggtcgcTGAATGCAGGAAACTGGCAGTGGCTCTCCGCCAGCACGTTCTTCCATCAGTACTTCCGAGTTTACTCTCCTATCGCCTTTGgaaagaaaacagacaaacatGGGGATTACATTAAGAAATACCTGCCGGTGCTGAAGAAGTTTTCCACCGAGTACATCTATGAACCCTGGAAAGCTCCTCGGAGTGTTCAGGAGAGAGCAGGATGCATTGTCGGAAAAGACTACCCTCGTCCTATTGTGGATCATGAGGTTGTCCATAAAAAGAACATTCTGAGAATGAAAGCAGCATATGCGAAACGCTCACCAGAAGACAAAACCATCAACAAAGgtgAAAAGCGCAAAGCGAGTCCATCCATCAAGGAGATGTTTCAGAAGAAGGCAAAGAGATAAATCTGAGTTCTctcatcattattatttgtatatgatGTTCTTCCATAGGTCAATAATGGTTCTTTATACTTAACTTACTTACATACTTGCATGTTTAaggataaatatacatttttgtttagcTGGGATTGCTTAGCTGTCATAGTTTTACTTTCTTATTTTAAAGCGCTACGGCACTTTACATTTTATTGACTATTTAGATGCTGTAAATACGTGTGCCTTACAGGGACAGTcatcccaaaaataaaaatttccttaCCATTTCCTCACACTTTgagttctaaacttttatgaatttattactttgttgaacacaaaacaagatattttgaagattgttggaGGAAAAAGCAACCTTATTAGGGATGGTTGTTCCGtttcaacattcctcaaaatatcttttttttttttttttgttcaacagaagaaagaaactcaaacaggtttggattaaatggaggatgagtaaataatgacagacttttcatttttgggtcaactgtcCATCCTTTTAAATGCAAAGTGATTTTCTGCTGGATTGattaaacctgtgtgtgtgtgtgtgaaaataaacTGACATAAATAATCTTTTACTGTAAGTGaacatatgtattttatttacatgtatGATTCTATACATATTAaagcatacactacctgacaaaagtcttgtcgcctatccaattttaggaccaacaaataataacttgacttctagttgatcatttagtaacAGAAgaggcttatatgaaaagcaaaggcctctagattacgcttattttaccaaaataaaatataatcacgccttgatttttaatgatttcattaggacagtaaggtctgtcactgaacagaaataatgtccagtatagaatataaagtcatggtgcagtggaagaagaatgaatattgtgtctgaccccatgagcttggaggactgcatacatacatatctgcataatttattaataaagtcatctggaaaggcaaagaaagtgttcctgcaggactcccagagttcatcaagattctttggattcatcttcaatgcctcctccttcatcttactgaggacatgctcaataatgttcatgtctggtgactgggctggccaatgctgGAACACATTGAGCTTCTTcgttttcaggagctttgatgtggaggctgaagtatcaGGAGCAtcatcctgctggagaatttgccctctcctgtggtttgtaacataatgggcagcacaagtgtcttgatacctcaggctgttgatgttgccatccactctgcagatctctcgcacacccccatactgaatgtaaccccaaaccatgatttttccttcaccaaacttgaaaaaattctgtgagaatcttgggtccatgcggggtCCATGTGGGTaactgcagtatttgtgataattgagatgcagttcaacagatgattcatcaaaaaagtcaaccttctgccacttttccaaatgatcaactagaagtcaagttattatttgtgagagggtgctcgctgcagagccatttcaCAAATTCAGTAGAAGAGTGGTATTAAACAATAATCTATGTGACTAAAATGGTATTTCAGAACGAAAAAGTTGTTCATCCAAAAGCCAGCAGATTAGAAACTGAAATGATGGTAAtaatcaggggtgctcaaacttttgCATGATTTCCCTCCTAGAAAATAAGCATAAATACCCAAGGAAATAAAATGATGCAAGAATAAAACGGATCTTTGTTGGTGCTCTTCCACAATATTTATGCGTTTTCACATCCATATTAACAAACAATAacatgtacacatttataaaattcAGTCCATCAGGTCTGATTTAAATTTGAAGACAAACTTTTAAAGTTTACGATTGTTTTTGGTGTTCATTTCTGAAACTTTATGAATATGGCAACCTAAAAACAGTCTAAAAGATGAATCTGTCGTATGCATATTCAAATATATGCAAATTCAAAGACGCAACTGAATCTCCTGATCTCTTGTTGGTATTGCAATGATTTTTTTGCACGGTGAATTTGGTTGAAACTCCAGCAGCATTTATCACTTTCctctttaaagggttagttcacccaaaaatctcaATTCTGTCAGTTACTACCCCTCATGCCTTTTCAATTTCCCGtcattcatcttcagaagacaaatgaagatattttagatgaaatcagagagctctctcatcctcaatagacagcaatggtcagACGTTCAGAAAActcacattaaaaaatactatagtgtttttaaaccatactatagtaaagtatggtggctcagtggttagcactatcacctcacagcaaaaaggtcgctggttcgactccccgactgggtcagttggcgtttctgtgtggagtttgcatgttctccccgagttggcgtgggtttcctccaggtgctctggtttcctccacagtccaaagacatgctctataggtgaattgaataaactaaattgactgttgtgtatgagtgtgtatggttgtttcccagtactaggttgcagccggaaaagcatccgctgtgtaaaacatatgctatacAAGTTGTAATTGTTAACAGAAccttcatttttgagtgaactaaccctttaatctCCCAATAATCTAAGTTTCTGTTTCATTACTTAACTGAATCACCATCTGAAACATCGCTTCAGTTTCTCCAGCGAGTTTCCCTGCACATACCGTCTTCCTCACACAATGTTTCTCTCCAGTATGGGCTTCTTCTTGATGATCCGTTTGATGCCAAAAGCACTGAGGTCGATGGTTTTATATCCTCTGTCCAGAATGAGCTCAGCGATGGCACGTCCCACCGCAGGAGACTGCTGTAAACCGTGACCGCTGAAGCCTGTGGCGAAGTACATGTTGGCCACTAGAGGGTGCAGTCCTAAAATACCATTCTGATCAAAGGTGTTGTAGTCGTAAAATCCAGCCCACGCGCTTGAAACCTGACAAATACAGCAGAATGCAGCAACATGTTTACTTTAACATTGACTGTATTTTACTGAAAATATGCCACAGATGGCTGAAAGTCGCAGTTAAATATGAAGCATGTGTAAGATCTGTAAGTCTCTATCTGTATGAGAcattatgcatataaaaaaagaacaattttgCATGCTAAATCTCACCTTCAGCTTCTCAAAAGCAGGAATTCGGTGAGCCAGATGATGCCAGACCTTCTCTTGAAAAAACTCATGGTCCACATCCAGGTTACTGATATCCGGTTCTTCTGTCTGCATCAAAACATGCATCAAATCatgaaaaaaatgtgtgaaatgaatgaatgcagatgGTGCTAATTCCATTTCAGTGTCTGTACCTCCTCTGGTGACATTCCTGCGATGTAATTTCCTCCCAGTCCCTCTCGCCTCAGGTAAACCCCTGAATAATCGATCAGAAACGGAGTGTCCAAACCCGGTCCATCAGGGCAATGAACCACATAAGCAAACCTGCAGGAGACATCGGTGGATTTACTAATAATATATCATTTGTATATTAGATTGGAGCTAAATTtacaaactataattaataacTTGGTGACAATAATAAATTAGTGATGGCATACGGCATCCGATCAATCTTACAGAGGATAAGAGGTTTGGAGAATGAATGCATGAACGGGAGTAGTTATAATATTTACAACTGCTCATTAATATaaacttacttcatttaatttaataatgtaatatattttctaaaaaaaaaaagtaaaaaaaaaagtctgtatattataataatttaaaatactaGAATAtacttataaattaaataatataaatttttaatagcattaattataatatataataattattagcactaataataatgaatgaagcAATAATATTATAATCTATAAAAAATggaaatatacataatatataaaatggaataatacataaaatgtaaataagtattgaataaTAAAGGAacccacaatccaaaaacatgtgctataggtgaattgggtgagataaattgtccgtagtgtatgtgtgtgaatgagtgtgtatggaagttttccagtgatgggttgcggctggaagggcatccgctgcataaaacgtgctggctaagttggcggttcattccgctgtggcgaccccagattaaaaaagggactgatccgaaaagaaaataattgaatgagtaatattatatattaatgcaTATTTTCAACAGTTAGTTACTTCAGAATATTTAGAATtgtgaatttaaattaaattgaaatattttctataaataatgatttacttttacaaataaattgtcgttctaatatttaaattataatttaaaaagaacaaaacttCATTAATAATATAcgtagaataaaatatataattaagttACTTAGAA
>TCONS_00005487
actgatTGGCTGAACACGTCGGACACGTGCTGCTTGAAATACACATCTTTTGTAACGCCAGGGAAGCTGTTACAAAACGCAAAGCAGAGCTCACGTAATCAGAAGACTCTGTGGAGGTCTCCATAGTCCAAAGGCGACAACGATGAGCCATAACACCATTCACTGGTTCCGCAAGGGGCTGCGTTTGCATGATAACCCTGCTCTGATCGCTGCTCTGAAAGACTGTAGACACATCTACCCCCTGTTCCTGCTGGACCCCTGGTTCCCCAAAAACACTCGCATCGGCATTAATCGATGGAGATTTCTCATTGAAGCCCTCAAGGATCTGGACTCCAGTCTGAAGAAACTCAACTCAAGGCTCTTTGTCGTCAGAGGGTCGCCCACAGAGGTTCTCCCAAAGCTCTTTAAGCAATGGAAGATCACTCGTTTGACTTTCGAGGTTGATACAGAGCCGTACAGTCAGAGCAGAGACAAAGAAGTCATGAAGCTGGCCAAGGAATACGGCGTGGAAGTTACTCCAAAGATTTCTCATACTCTCTACAACATCGACAGAATTATCGATGAGAACAATGGCAAGACTCCCATGACCTACATTCGCTTGCAAAGTGTGGTGAAGGCCATGGGTCACCCTAAAAAACCCATTCCTGCTCCAACCAACGAGGACATGCGAGGTGTGTCCACTCCACTTTCTGATGATCATGAAGAAAAGTTTGGGATCCCAACTCTTGAGGATCTTGGACTGGATACGTCATCCTTAGGGCCACATTTGTTCCCGGGTGGTGAACAGGAAGCTCTGCGCAGACTAGATGAGCACATGGAGAGAACGaactgGGTGTGCAAGTTTGAGAAGCCAAAGACGTCCCCAAACTCCTTGATCCCTAGCACCACCGTCCTGAGCCCCTACGTCCGGTTCGGCTGCTTGTCTGCACGCACCTTCTGGTGGAGGCTCGCAGACGTGTACAGAGGGaAGACACACTCTGATCCTCCGGTTTCTCTGCATGGCCAGCTGCTGTGGAGAGAGTTTTTCTACACGACTGCCGTCGGGATCCCAAACTTCAACAAAATGGAGGGAAACTCTGCCTGTGTGCAGGTGGACTGGGACAACAATCCTGAGCACCTCGCAGCATGGAGAGAGGCTCGGACCGGGTTTCCCTTCATTGACGCCATCATGACTCAGTTACGACAGGAGGGCTGGATCCACCATCTGGCCCGGCACGCGGTCGCATGTTTTCTGACCCGAGGTGACTTGTGGATCAGCTGGGAGGAGGGCCAGAAGGTGTTCGAGGAGCTgctgctggattctgattggtcgcTGAATGCAGGAAACTGGCAGTGGCTCTCCGCCAGCACGTTCTTCCATCAGTACTTCCGAGTTTACTCTCCTATCGCCTTTGgaaagaaaacagacaaacatGGGGATTACATTAAGAAATACCTGCCGGTGCTGAAGAAGTTTTCCACCGAGTACATCTATGAACCCTGGAAAGCTCCTCGGAGTGTTCAGGAGAGAGCAGGATGCATTGTCGGAAAAGACTACCCTCGTCCTATTGTGGATCATGAGGTTGTCCATAAAAAGAACATTCTGAGAATGAAAGCAGCATATGCGAAACGCTCACCAGAAGACAAAACCATCAACAAAGgtgAAAAGCGCAAAGCGAGTCCATCCATCAAGGAGATGTTTCAGAAGAAGGCAAAGAGATAAATCTGAGTTCTctcatcattattatttgtatatgatGTTCTTCCATAGGTCAATAATGGTTCTTTATACTTAACTTACTTACATACTTGCATGTTTAaggataaatatacatttttgtttagcTGGGATTGCTTAGCTGTCATAGTTTTACTTTCTTATTTTAAAGCGCTACGGCACTTTACATTTTATTGACTATTTAGATGCTGTAAATACGTGTGCCTTACAGGGACAGTcatcccaaaaataaaaatttccttaCCATTTCCTCACACTTTgagttctaaacttttatgaatttattactttgttgaacacaaaacaagatattttgaagattgttggaGGAAAAAGCAACCTTATTAGGGATGGTTGTTCCGtttcaacattcctcaaaatatcttttttttttttttttgttcaacagaagaaagaaactcaaacaggtttggattaaatggaggatgagtaaataatgacagacttttcatttttgggtcaactgtcCATCCTTTTAAATGCAAAGTGATTTTCTGCTGGATTGattaaacctgtgtgtgtgtgtgtgaaaataaacTGACATAAATAATCTTTTACTGTAAGTGaacatatgtattttatttacatgtatGATTCTATACATATTAaagcatacactacctga

Function

symbol description
cry5 Enables DNA (6-4) photolyase activity. Acts upstream of or within DNA repair and response to light stimulus. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; integument; liver; and pleuroperitoneal region.

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0009416 response to light stimulus biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003914 DNA (6-4) photolyase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0071949 FAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010426-8 Enables DNA (6-4) photolyase activity. Acts upstream of or within DNA repair and response to light stimulus. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; integument; liver; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000019498

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005486 False 5975 mRNA 0.40 10 39264802 39281475
TCONS_00005487 True 2363 mRNA 0.45 11 39268523 39283883

Neighbor

gene id symbol gene type direction distance location
XLOC_002976 b3gat1b coding downstream 65860 39178450 ~ 39198942 (-)
XLOC_002975 slc37a4b coding downstream 110024 39133410 ~ 39154778 (-)
XLOC_002974 rps25 coding downstream 133867 39125637 ~ 39130935 (-)
XLOC_002972 igsf5a coding downstream 172908 39028331 ~ 39091894 (-)
XLOC_002973 NA coding downstream 174714 39087325 ~ 39090088 (-)
XLOC_002978 smtlb coding upstream 30695 39314578 ~ 39321367 (-)
XLOC_002979 taar20i coding upstream 1047308 40331191 ~ 40366397 (-)
XLOC_002980 taar20h coding upstream 1063197 40347080 ~ 40348132 (-)
XLOC_002981 taar20f coding upstream 1067315 40351198 ~ 40352250 (-)
XLOC_002982 taar20g coding upstream 1075694 40359577 ~ 40360635 (-)
XLOC_002970 NA non-coding downstream 600568 38663993 ~ 38664234 (-)
XLOC_002969 NA non-coding downstream 738092 38511908 ~ 38526710 (-)
XLOC_002967 NA non-coding downstream 766730 38412930 ~ 38498072 (-)
XLOC_002983 AL953903.2 non-coding upstream 1091127 40375010 ~ 40375996 (-)
XLOC_002985 AL953903.1 non-coding upstream 1099899 40383782 ~ 40384432 (-)
XLOC_002989 AL953903.3 non-coding upstream 1120111 40403994 ~ 40404331 (-)
XLOC_002993 BX530037.4 non-coding upstream 1134924 40418807 ~ 40419059 (-)
XLOC_003000 BX530037.2 non-coding upstream 1184489 40468372 ~ 40469394 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000197_00312672_00317745 CRY5 coding CI01000197 null 312523 ~ 317745 (-)