XLOC_002972 (igsf5a)


Basic Information

Item Value
gene id XLOC_002972
gene name igsf5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39028331 ~ 39091894 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005476
TGAAACTAGGTGTGTCTGCTTCACGGTATTTAAATCATACAAAAATGACTCCAGACAGATGGATTATGGACTCCTGAACTGAAGAAGTGATCCTTCAGATGACAGAAAAGCAGTTGATCTTTGGCCCCTATGAGGGCCCACAGGTGATCTGACGAAGGAAAGCTCGGGAGCGTTTCTCTGTTCTGGCTGGATTGGTGGACGTTTTGGAGGACTGTGTGTGGATGCTGGTGTAAAACATGAATGTTTTTATACTGGCACTTTTTCTTCTCATCGCCAATGGAGAGTCAGCCGATCTCCAGCCTCAAAACGCTGCAGTTCTCCAAGGCTCCAGTGCTCAGTTTAACTGCAGCAGCACTCAACCTCCACAAATCATGACCTTTATGCTCAATGGACGCTTGGTTGTGACCATCATGCAAACTTCTGGGGTGTTGAACAGCACGGACCGCTTTTCTGCTAGTAATTTCACCACGCCTGGAAATTACAAATGGCAGTTTACCATCAGCAACGTGCAGAGAAGCGATGCGGGTGTAGTCGCCTGTCAGGTTTTGGGTGGAGATGCTGTGACGGCCACACTGTCTGTACAAGATCGGGGCACTGTGCAGATCGCAGGGGGAAATCAGACCAAAATGCTGGGTGTTCAGACGCAGTTTAGCTGTTTGGCCGCGGGCTGGTACCCCGAGCCCAACATGTCCTGGTCTGTGAACGGAGAGACTCAATTCTGCAACAAAAGTTCCGTCACACAGGGAGGACTGTATAACTCCAGCTGCACGCTCACACTCACGGCCAGCAAAAACTCAACTGTACAGTGTCTGGCTGCTATACCTGCCCTGAACACACCAGACAGCAACACTGTATTCCTGACTGTTGTAAAAAAAGACCAGACAGTGTTGATCGCTATCACCGTTGCCTTCAGTGCTGCTGCTCTACTGTTTCTCATCATCTATGGCATCATTTTCTTCTGCAGGAGAAAGAAGAAAAAATCGAGCTACCAAGAGGAGGTCAGAAGGGCGCGGGTTCAGTCCCAGGCCAGGATTTCAGCCATAGAAGAAGTGCGAGGAAGGGACAACCGAGGATATATAACAGATGGACGTGACCGACAAAATAATGGCGGCGTCTGGTACACAAAGAATTCCAACAGACTTCAGCTGCCCGATGACTTTTTTGGAGATGACCAGAGGAAGCACAGACACATGACCATGGTCTGAGACTAAGACTGACCTGAACATGTTGGATTTTATGGACAGCAGGTGTTCTGgctcctttctttttttcttttttccgtTTTATTTCCGATTATAGACAAAAAGGAGCCTGAAGGACGGTTTATCAGCACACAAGCTCCGGGATTTTCTCTGTGGTCTCAGACTTTTGGACCGCACTGAATAcggtttatttatttgcatttttgacgTTATGAACTCTCACTTTTCTGAGGGTTCATTAGATAGACATGGGAGGTTTTGTAGCCAAATGAACAAAGCATGAAAAGTAATTTTTTATACATCTACGTGTGTAAAACAAGACGTTTCCACAGCAGGTTTGTTTTGAATCAACAGCATCCTGTTTCCTCCAGAATTACAAAATCATCAGCATATGGCACAACACACCCGTGAGAGTTCTGCttcctgtgttttttttaatagccgCTTTCAATTAAAACCAAAGACTTTTCACGAGAAGCCTTCGGAGAGGATTATATTATCACGTCCTGTTTCACTGAGCAATGCATTTAAACTATGAATGCATTTAATCTCCAATATTACATTAATCATGCAGTGAAGTGTCATGGATTAGAACTAAATGAATCAATCACTTATTCAGTGATATCAAATTCAGATTAAAAGTGCAGTTTTAGTTCTTCACATTTTCTCATTTGTGTGGGACTAAAATTGATAAATAAAGAAGAttgaacaaattattattattatttttaaaaaacctcAATAGTGTTAATGTActgctaaattattttaaacaatgcatttgtaaaaatacattttccaaccttatttttgtcttgttttaaggatTAACTGCTTAAAATTGTGCTTTATTTGTGACCATGGCCATGAATTTAGTCATATGTGGCAAttttttaacccaggctcattctgaaaatgcaatgaaaaactcttatcaaacctcttcagctgcttcagaacgcagcagcacgagtggtctttaaggaacctaaaagagcacatgtcactccgctgctcatccgtttgcactggctgccagttgctgctcgcatcaaattcatatcgctgatgtttgcttacaaagcgacttctggctttgctcctttttATTTGCTCTCGCTcgtgcagatttatgtgccctccagaaacttgcgttctgtgaatgaacctCGCCTTATGGTTCCATCCCTAAGAGGGAAAAAAACACTTTCCCGAAATCTTGCATTCAATCTTcgcagttggtggaatgaactccctaactgcatcagaatggcagagtcactcgctgtcttcaagaaatgactaaaaactcaactatagtctccactttccttcctaatctgcaattgcctctctggctataccacCAACTTtactcaaaaaaacaacaaaaccttacattaataatgctttgcttcttagactttacagacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttccttgtcctcatttgtaagtcgctttggataaaagcatctgctaaatgactaaatgtaaatgtaaaaaaaaaagagtcctcgtctaatttttaccacattttcagatttttaaaaatgattatttttaggggttttcacctttattgggatagtggagattttacagaaaggaaagtgtggggagcagagataggggaaggatcctcaagctgggaatcaaactcgggtagTCATAAGCACCTTGGTgctattttcagatttgaccagattcttaccctgttatttacttgtttattgtattatttggtttttgtcttacccgctttctggaaccgttctttgccagactccaACCCTGTCATCGTAGTCAACTCCCCTCTGCGTCTCCAGTCTGCCGACATACGCAGCAAGCTACTGAACacactggtaacagtggaaaaaacGTCCATAATGAGGTAAGCGGTCAACTAGGAAGGATGAAAAAGaacgtcataccgccctgtaatgtccgttttaaagacaaaatgcagccatatgtacttctggctacataatacgCATGGCTCCATTAATTTATATAGGGGACATTTTCACAATCAGCCTGTATGccaattttatattaataatgcaGCAAAGTGTGAATTGGAGCTAAATAAATCAATCACTTATTCAATGATATTAAATTCAGATTAAAAGTGCAGTTTTAGTTCTTCAGACTTATTTTAAACAATGCATTTGTAAAAATAcgtttttcaagtttttttgttttttttggttcttGTTTTAaggataatttatttaaaattgtgctTTATTTGTGAACTTGGCCATAAATGCAGTCATAACTAAGTGACAatttttcaacccaagctcattctaaaaatgtaccccCTTAAACATTTCCGGAGAGCATCAAATACGTCACAGGaggactttttttgttgttgcagtttttgtgaatcaACCAggggccactgtgtacgctttttgagatctcttaaatttctctcgcgggTGCCATTCACACCttctcttctcacgtaaatccaccagaggctgctgttgactgactgactgactgacagactgactgactgactgactgactgaccgatcgacagacccaccctcctccttccgtaaacccaaccaatagttttcaAAAGCAGAAAAGTTCTAGTGTccgcctgatttttactacgttttcagatttaacACATTCTtaccatgttatttacttgtttattttattttttagcttctgtttttaTCCTAACTGGTTTCTGTAACCATTCTTTTCCGGACTCAAACCCTATTGTCgctgtcaactcctctctgcctcttaagtccgctgac
>TCONS_00005477
GCTGTACTTGCAAGTACTCATTATCACACATTATAAAAGCCTCTTTATAAAGTATTATATAACAGTCTCACCACATTTTTCTGCAAATGTTCCAGTCGCTGGTGCTGAACATTGAACGCGGCTCCAACAGCAGACCAGGTGTTGACGCTGCGTCTGTAGAGCGCGTGCACGCAGCGCATCACTGATCATCACAGTCAACACTACTAACAAGCATTACAGCAGCAGCTCGTGAGAAACTGCGCTCAGAAACAGCCTCTTGCAAACTATTATGCAAACATAACTAACTAAAGTTGCCCAATTCGCTAATCTACGGAGCTCAGCAGTGGATTTGACCTCTCATCCAAAAAACAACCGACTGTGTGTGGATGCTGGTGTAAAACATGAATGTTTTTATACTGGCACTTTTTCTTCTCATCGCCAATGGAGAGTCAGCCGATCTCCAGCCTCAAAACGCTGCAGTTCTCCAAGGCTCCAGTGCTCAGTTTAACTGCAGCAGCACTCAACCTCCACAAATCATGACCTTTATGCTCAATGGACGCTTGGTTGTGACCATCATGCAAACTTCTGGGGTGTTGAACAGCACGGACCGCTTTTCTGCTAGTAATTTCACCACGCCTGGAAATTACAAATGGCAGTTTACCATCAGCAACGTGCAGAGAAGCGATGCGGGTGTAGTCGCCTGTCAGGTTTTGGGTGGAGATGCTGTGACGGCCACACTGTCTGTACAAGATCGGGGCACTGTGCAGATCGCAGGGGGAAATCAGACCAAAATGCTGGGTGTTCAGACGCAGTTTAGCTGTTTGGCCGCGGGCTGGTACCCCGAGCCCAACATGTCCTGGTCTGTGAACGGAGAGACTCAATTCTGCAACAAAAGTTCCGTCACACAGGGAGGACTGTATAACTCCAGCTGCACGCTCACACTCACGGCCAGCAAAAACTCAACTGTACAGTGTCTGGCTGCTATACCTGCCCTGAACACACCAGACAGCAACACTGTATTCCTGACTGTTGTAAAAAAAGACCAGACAGTGTTGATCGCTATCACCGTTGCCTTCAGTGCTGCTGCTCTACTGTTTCTCATCATCTATGGCATCATTTTCTTCTGCAGGAGAAAGAAGAAAAAATCGAGCTACCAAGAGGAGGTCAGAAGGGCGCGGGTTCAGTCCCAGGCCAGGATTTCAGCCATAGAAGAAGTGCGAGGAAGGGACAACCGAGGATATATAACAGATGGACGTGACCGACAAAATAATGGCGGCGTCTGGTACACAAAGAATTCCAACAGACTTCAGCTGCCCGATGACTTTTTTGGAGATGACCAGAGGAAGCACAGACACATGACCATGGTCTGAGACTAAGACTGACCTGAACATGTTGGATTTTATGGACAGCAGGTGTTCTGgctcctttctttttttcttttttccgtTTTATTTCCGATTATAGACAAAAAGGAGCCTGAAGGACGGTTTATCAGCACACAAGCTCCGGGATTTTCTCTGTGGTCTCAGACTTTTGGACCGCACTGAATAcggtttatttatttgcatttttgacgTTATGAACTCTCACTTTTCTGAGGGTTCATTAGATAGACATGGGAGGTTTTGTAGCCAAATGAACAAAGCATGAAAAGTAATTTTTTATACATCTACGTGTGTAAAACAAGACGTTTCCACAGCAGGTTTGTTTTGAATCAACAGCATCCTGTTTCCTCCAGAATTACAAAATCATCAGCATATGGCACAACACACCCGTGAGAGTTCTGCttcctgtgttttttttaatagccgCTTTCAATTAAAACCAAAGACTTTTCACGAGAAGCCTTCGGAGAGGATTATATTATCACGTCCTGTTTCACTGAGCAATGCATTTAAACTATGAATGCATTTAATCTCCAATATTACATTAATCATGCAGTGAAGTGTCATGGATTAGAACTAAATGAATCAATCACTTATTCAGTGATATCAAATTCAGATTAAAAGTGCAGTTTTAGTTCTTCACATTTTCTCATTTGTGTGGGACTAAAATTGATAAATAAAGAAGAttgaacaaattattattattatttttaaaaaacctcAATAGTGTTAATGTActgctaaattattttaaacaatgcatttgtaaaaatacattttccaaccttatttttgtcttgttttaaggatTAACTGCTTAAAATTGTGCTTTATTTGTGACCATGGCCATGAATTTAGTCATATGTGGCAAttttttaacccaggctcattctgaaaatgcaatgaaaaactcttatcaaacctcttcagctgcttcagaacgcagcagcacgagtggtctttaaggaacctaaaagagcacatgtcactccgctgctcatccgtttgcactggctgccagttgctgctcgcatcaaattcatatcgctgatgtttgcttacaaagcgacttctggctttgctcctttttATTTGCTCTCGCTcgtgcagatttatgtgccctccagaaacttgcgttctgtgaatgaacctCGCCTTATGGTTCCATCCCTAAGAGGGAAAAAAACACTTTCCCGAAATCTTGCATTCAATCTTcgcagttggtggaatgaactccctaactgcatcagaatggcagagtcactcgctgtcttcaagaaatgactaaaaactcaactatagtctccactttccttcctaatctgcaattgcctctctggctataccacCAACTTtactcaaaaaaacaacaaaaccttacattaataatgctttgcttcttagactttacagacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttccttgtcctcatttgtaagtcgctttggataaaagcatctgctaaatgactaaatgtaaatgtaaaaaaaaaagagtcctcgtctaatttttaccacattttcagatttttaaaaatgattatttttaggggttttcacctttattgggatagtggagattttacagaaaggaaagtgtggggagcagagataggggaaggatcctcaagctgggaatcaaactcgggtagTCATAAGCACCTTGGTgctattttcagatttgaccagattcttaccctgttatttacttgtttattgtattatttggtttttgtcttacccgctttctggaaccgttctttgccagactccaACCCTGTCATCGTAGTCAACTCCCCTCTGCGTCTCCAGTCTGCCGACATACGCAGCAAGCTACTGAACacactggtaacagtggaaaaaacGTCCATAATGAGGTAAGCGGTCAACTAGGAAGGATGAAAAAGaacgtcataccgccctgtaatgtccgttttaaagacaaaatgcagccatatgtacttctggctacataatacgCATGGCTCCATTAATTTATATAGGGGACATTTTCACAATCAGCCTGTATGccaattttatattaataatgcaGCAAAGTGTGAATTGGAGCTAAATAAATCAATCACTTATTCAATGATATTAAATTCAGATTAAAAGTGCAGTTTTAGTTCTTCAGACTTATTTTAAACAATGCATTTGTAAAAATAcgtttttcaagtttttttgttttttttggttcttGTTTTAaggataatttatttaaaattgtgctTTATTTGTGAACTTGGCCATAAATGCAGTCATAACTAAGTGACAatttttcaacccaagctcattctaaaaatgtaccccCTTAAACATTTCCGGAGAGCATCAAATACGTCACAGGaggactttttttgttgttgcagtttttgtgaatcaACCAggggccactgtgtacgctttttgagatctcttaaatttctctcgcgggTGCCATTCACACCttctcttctcacgtaaatccaccagaggctgctgttgactgactgactgactgacagactgactgactgactgactgactgaccgatcgacagacccaccctcctccttccgtaaacccaaccaatagttttcaAAAGCAGAAAAGTTCTAGTGTccgcctgatttttactacgttttcagatttaacACATTCTtaccatgttatttacttgtttattttattttttagcttctgtttttaTCCTAACTGGTTTCTGTAACCATTCTTTTCCGGACTCAAACCCTATTGTCgctgtcaactcctctctgcctcttaagtccgctgac
>TCONS_00005478
ACTGATCATTGTAAGGTTGTGTCCCGTCAGTGGCTCTGCCCTTTTTCTAAATGCTGTACTTTCATTGTAGGACTGTGTGTGGATGCTGGTGTAAAACATGAATGTTTTTATACTGGCACTTTTTCTTCTCATCGCCAATGGAGAGTCAGCCGATCTCCAGCCTCAAAACGCTGCAGTTCTCCAAGGCTCCAGTGCTCAGTTTAACTGCAGCAGCACTCAACCTCCACAAATCATGACCTTTATGCTCAATGGACGCTTGGTTGTGACCATCATGCAAACTTCTGGGGTGTTGAACAGCACGGACCGCTTTTCTGCTAGTAATTTCACCACGCCTGGAAATTACAAATGGCAGTTTACCATCAGCAACGTGCAGAGAAGCGATGCGGGTGTAGTCGCCTGTCAGGTTTTGGGTGGAGATGCTGTGACGGCCACACTGTCTGTACAAGATCGGGGCACTGTGCAGATCGCAGGGGGAAATCAGACCAAAATGCTGGGTGTTCAGACGCAGTTTAGCTGTTTGGCCGCGGGCTGGTACCCCGAGCCCAACATGTCCTGGTCTGTGAACGGAGAGACTCAATTCTGCAACAAAAGTTCCGTCACACAGGGAGGACTGTATAACTCCAGCTGCACGCTCACACTCACGGCCAGCAAAAACTCAACTGTACAGTGTCTGGCTGCTATACCTGCCCTGAACACACCAGACAGCAACACTGTATTCCTGACTGTTGTAAAAAAAGACCAGACAGTGTTGATCGCTATCACCGTTGCCTTCAGTGCTGCTGCTCTACTGTTTCTCATCATCTATGGCATCATTTTCTTCTGCAGGAGAAAGAAGAAAAAATCGAGCTACCAAGAGGAGGTCAGAAGGGCGCGGGTTCAGTCCCAGGCCAGGATTTCAGCCATAGAAGAAGTGCGAGGAAGGGACAACCGAGGATATATAACAGATGGACGTGACCGACAAAATAATGGCGGCGTCTGGTACACAAAGAATTCCAACAGACTTCAGCTGCCCGATGACTTTTTTGGAGATGACCAGAGGAAGCACAGACACATGACCATGGTCTGAGACTAAGACTGACCTGAACATGTTGGATTTTATGGACAGCAGGTGTTCTGgctcctttctttttttcttttttccgtTTTATTTCCGATTATAGACAAAAAGGAGCCTGAAGGACGGTTTATCAGCACACAAGCTCCGGGATTTTCTCTGTGGTCTCAGACTTTTGGACCGCACTGAATAcggtttatttatttgcatttttgacgTTATGAACTCTCACTTTTCTGAGGGTTCATTAGATAGACATGGGAGGTTTTGTAGCCAAATGAACAAAGCATGAAAAGTAATTTTTTATACATCTACGTGTGTAAAACAAGACGTTTCCACAGCAGGTTTGTTTTGAATCAACAGCATCCTGTTTCCTCCAGAATTACAAAATCATCAGCATATGGCACAACAC

Function

symbol description
igsf5a Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-182 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5).

Ensembl:

ensembl_id ENSDARG00000087983

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005476 False 4049 mRNA 0.41 10 39028331 39055620
TCONS_00005477 False 4193 mRNA 0.41 9 39028331 39091894
TCONS_00005478 True 1466 mRNA 0.46 8 39030775 39052264

Neighbor

gene id symbol gene type direction distance location
XLOC_002971 pcp4a coding downstream 16817 38969429 ~ 39011514 (-)
XLOC_002970 NA coding downstream 364097 38663993 ~ 38664234 (-)
XLOC_002969 NA coding downstream 501621 38511908 ~ 38526710 (-)
XLOC_002967 NA coding downstream 530259 38412930 ~ 38498072 (-)
XLOC_002968 BX000451.3 coding downstream 593832 38434383 ~ 38434499 (-)
XLOC_002974 rps25 coding upstream 33743 39125637 ~ 39130935 (-)
XLOC_002975 slc37a4b coding upstream 41516 39133410 ~ 39154778 (-)
XLOC_002976 b3gat1b coding upstream 86556 39178450 ~ 39198942 (-)
XLOC_002977 cry5 coding upstream 172908 39264802 ~ 39283883 (-)
XLOC_002978 smtlb coding upstream 222684 39314578 ~ 39321367 (-)
XLOC_002966 CU914142.1 non-coding downstream 652078 38376134 ~ 38376253 (-)
XLOC_002983 AL953903.2 non-coding upstream 1283116 40375010 ~ 40375996 (-)
XLOC_002985 AL953903.1 non-coding upstream 1291888 40383782 ~ 40384432 (-)
XLOC_002989 AL953903.3 non-coding upstream 1312100 40403994 ~ 40404331 (-)
XLOC_002993 BX530037.4 non-coding upstream 1326913 40418807 ~ 40419059 (-)
XLOC_003000 BX530037.2 non-coding upstream 1376478 40468372 ~ 40469394 (-)

Expression


Co-expression Network