RNA id: TCONS_00005477


Basic Information

Item Value
RNA id TCONS_00005477
length 4193
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_002972
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39028331 ~ 39091894 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTACTTGCAAGTACTCATTATCACACATTATAAAAGCCTCTTTATAAAGTATTATATAACAGTCTCACCACATTTTTCTGCAAATGTTCCAGTCGCTGGTGCTGAACATTGAACGCGGCTCCAACAGCAGACCAGGTGTTGACGCTGCGTCTGTAGAGCGCGTGCACGCAGCGCATCACTGATCATCACAGTCAACACTACTAACAAGCATTACAGCAGCAGCTCGTGAGAAACTGCGCTCAGAAACAGCCTCTTGCAAACTATTATGCAAACATAACTAACTAAAGTTGCCCAATTCGCTAATCTACGGAGCTCAGCAGTGGATTTGACCTCTCATCCAAAAAACAACCGACTGTGTGTGGATGCTGGTGTAAAACATGAATGTTTTTATACTGGCACTTTTTCTTCTCATCGCCAATGGAGAGTCAGCCGATCTCCAGCCTCAAAACGCTGCAGTTCTCCAAGGCTCCAGTGCTCAGTTTAACTGCAGCAGCACTCAACCTCCACAAATCATGACCTTTATGCTCAATGGACGCTTGGTTGTGACCATCATGCAAACTTCTGGGGTGTTGAACAGCACGGACCGCTTTTCTGCTAGTAATTTCACCACGCCTGGAAATTACAAATGGCAGTTTACCATCAGCAACGTGCAGAGAAGCGATGCGGGTGTAGTCGCCTGTCAGGTTTTGGGTGGAGATGCTGTGACGGCCACACTGTCTGTACAAGATCGGGGCACTGTGCAGATCGCAGGGGGAAATCAGACCAAAATGCTGGGTGTTCAGACGCAGTTTAGCTGTTTGGCCGCGGGCTGGTACCCCGAGCCCAACATGTCCTGGTCTGTGAACGGAGAGACTCAATTCTGCAACAAAAGTTCCGTCACACAGGGAGGACTGTATAACTCCAGCTGCACGCTCACACTCACGGCCAGCAAAAACTCAACTGTACAGTGTCTGGCTGCTATACCTGCCCTGAACACACCAGACAGCAACACTGTATTCCTGACTGTTGTAAAAAAAGACCAGACAGTGTTGATCGCTATCACCGTTGCCTTCAGTGCTGCTGCTCTACTGTTTCTCATCATCTATGGCATCATTTTCTTCTGCAGGAGAAAGAAGAAAAAATCGAGCTACCAAGAGGAGGTCAGAAGGGCGCGGGTTCAGTCCCAGGCCAGGATTTCAGCCATAGAAGAAGTGCGAGGAAGGGACAACCGAGGATATATAACAGATGGACGTGACCGACAAAATAATGGCGGCGTCTGGTACACAAAGAATTCCAACAGACTTCAGCTGCCCGATGACTTTTTTGGAGATGACCAGAGGAAGCACAGACACATGACCATGGTCTGAGACTAAGACTGACCTGAACATGTTGGATTTTATGGACAGCAGGTGTTCTGgctcctttctttttttcttttttccgtTTTATTTCCGATTATAGACAAAAAGGAGCCTGAAGGACGGTTTATCAGCACACAAGCTCCGGGATTTTCTCTGTGGTCTCAGACTTTTGGACCGCACTGAATAcggtttatttatttgcatttttgacgTTATGAACTCTCACTTTTCTGAGGGTTCATTAGATAGACATGGGAGGTTTTGTAGCCAAATGAACAAAGCATGAAAAGTAATTTTTTATACATCTACGTGTGTAAAACAAGACGTTTCCACAGCAGGTTTGTTTTGAATCAACAGCATCCTGTTTCCTCCAGAATTACAAAATCATCAGCATATGGCACAACACACCCGTGAGAGTTCTGCttcctgtgttttttttaatagccgCTTTCAATTAAAACCAAAGACTTTTCACGAGAAGCCTTCGGAGAGGATTATATTATCACGTCCTGTTTCACTGAGCAATGCATTTAAACTATGAATGCATTTAATCTCCAATATTACATTAATCATGCAGTGAAGTGTCATGGATTAGAACTAAATGAATCAATCACTTATTCAGTGATATCAAATTCAGATTAAAAGTGCAGTTTTAGTTCTTCACATTTTCTCATTTGTGTGGGACTAAAATTGATAAATAAAGAAGAttgaacaaattattattattatttttaaaaaacctcAATAGTGTTAATGTActgctaaattattttaaacaatgcatttgtaaaaatacattttccaaccttatttttgtcttgttttaaggatTAACTGCTTAAAATTGTGCTTTATTTGTGACCATGGCCATGAATTTAGTCATATGTGGCAAttttttaacccaggctcattctgaaaatgcaatgaaaaactcttatcaaacctcttcagctgcttcagaacgcagcagcacgagtggtctttaaggaacctaaaagagcacatgtcactccgctgctcatccgtttgcactggctgccagttgctgctcgcatcaaattcatatcgctgatgtttgcttacaaagcgacttctggctttgctcctttttATTTGCTCTCGCTcgtgcagatttatgtgccctccagaaacttgcgttctgtgaatgaacctCGCCTTATGGTTCCATCCCTAAGAGGGAAAAAAACACTTTCCCGAAATCTTGCATTCAATCTTcgcagttggtggaatgaactccctaactgcatcagaatggcagagtcactcgctgtcttcaagaaatgactaaaaactcaactatagtctccactttccttcctaatctgcaattgcctctctggctataccacCAACTTtactcaaaaaaacaacaaaaccttacattaataatgctttgcttcttagactttacagacctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttccttgtcctcatttgtaagtcgctttggataaaagcatctgctaaatgactaaatgtaaatgtaaaaaaaaaagagtcctcgtctaatttttaccacattttcagatttttaaaaatgattatttttaggggttttcacctttattgggatagtggagattttacagaaaggaaagtgtggggagcagagataggggaaggatcctcaagctgggaatcaaactcgggtagTCATAAGCACCTTGGTgctattttcagatttgaccagattcttaccctgttatttacttgtttattgtattatttggtttttgtcttacccgctttctggaaccgttctttgccagactccaACCCTGTCATCGTAGTCAACTCCCCTCTGCGTCTCCAGTCTGCCGACATACGCAGCAAGCTACTGAACacactggtaacagtggaaaaaacGTCCATAATGAGGTAAGCGGTCAACTAGGAAGGATGAAAAAGaacgtcataccgccctgtaatgtccgttttaaagacaaaatgcagccatatgtacttctggctacataatacgCATGGCTCCATTAATTTATATAGGGGACATTTTCACAATCAGCCTGTATGccaattttatattaataatgcaGCAAAGTGTGAATTGGAGCTAAATAAATCAATCACTTATTCAATGATATTAAATTCAGATTAAAAGTGCAGTTTTAGTTCTTCAGACTTATTTTAAACAATGCATTTGTAAAAATAcgtttttcaagtttttttgttttttttggttcttGTTTTAaggataatttatttaaaattgtgctTTATTTGTGAACTTGGCCATAAATGCAGTCATAACTAAGTGACAatttttcaacccaagctcattctaaaaatgtaccccCTTAAACATTTCCGGAGAGCATCAAATACGTCACAGGaggactttttttgttgttgcagtttttgtgaatcaACCAggggccactgtgtacgctttttgagatctcttaaatttctctcgcgggTGCCATTCACACCttctcttctcacgtaaatccaccagaggctgctgttgactgactgactgactgacagactgactgactgactgactgactgaccgatcgacagacccaccctcctccttccgtaaacccaaccaatagttttcaAAAGCAGAAAAGTTCTAGTGTccgcctgatttttactacgttttcagatttaacACATTCTtaccatgttatttacttgtttattttattttttagcttctgtttttaTCCTAACTGGTTTCTGTAACCATTCTTTTCCGGACTCAAACCCTATTGTCgctgtcaactcctctctgcctcttaagtccgctgac

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-182 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5).

Ensembl:

ensembl_id ENSDART00000184505

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005778 lncRNA downstream 364097 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 501621 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 512800 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 597236 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00006119 lncRNA downstream 597673 38412930 ~ 38430658 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 1397743 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 1406265 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 1529087 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 1759243 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 2276214 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005475 mRNA downstream 16817 38969429 ~ 39011514 (-) True XLOC_002971
TCONS_00005470 mRNA downstream 530259 38430359 ~ 38498072 (-) False XLOC_002967
TCONS_00005473 mRNA downstream 559484 38448274 ~ 38468847 (-) True XLOC_002967
TCONS_00005469 mRNA downstream 571949 38430359 ~ 38456382 (-) False XLOC_002967
TCONS_00005479 mRNA upstream 33743 39125637 ~ 39130935 (-) False XLOC_002974
TCONS_00005480 mRNA upstream 33745 39125639 ~ 39130839 (-) True XLOC_002974
TCONS_00005481 mRNA upstream 41516 39133410 ~ 39154778 (-) False XLOC_002975
TCONS_00005482 mRNA upstream 44212 39136106 ~ 39153997 (-) False XLOC_002975
TCONS_00005483 mRNA upstream 52018 39143912 ~ 39153959 (-) False XLOC_002975
TCONS_00005472 other downstream 593832 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 652078 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 712261 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 953940 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 956163 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005497 other upstream 1283116 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 1291888 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005503 other upstream 1312100 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 1326913 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 1376478 40468372 ~ 40469394 (-) True XLOC_003000

Expression Profile

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