RNA id: TCONS_00006120


Basic Information

Item Value
RNA id TCONS_00006120
length 621
lncRNA type read_through
GC content 0.42
exon number 3
gene id XLOC_002967
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38412930 ~ 38498072 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attagtttcaGGTGTGTTCAATCAAAGCTAAACTTTGTATAACTGTgatcctccaggaactgagttggACATCTGTGGTGTGAGTTAAGCATGTTGATGTTATCCTGTGACCAATCAGCATCAGTTGAgttgcttcacttccattcaaaAATCCACTCCTGTGGCCTCATTGGACCTCAGCTGCACACTTCCAAATCTCACTTGAAGTTTCCAgTTTCTGGATCTTCTTCAGCGTGCCCTGCGCCTCGTCCTCCACCTCTGACCTCCTGGCCTGAAATAGTGGCATTGGGTTATTTCAGCAAATGAAGGAGATCACAGGCTCTCTATACAGCTGACCGGCCTCAAGATCAACGCACAAGAGTTTCCACGAACGGCTGCCGATTCTGGGTAATGCTAACACACTCTGACCTCCGGCACTGACCTTATTAAATGCCTCTCACAGATGTGCTTTCTGACACTCACAAGTCACTGAGTTCCTCATAATCTGACCTATttctgtcaactttttttttttatatatatatttttttgtttttttaatatcaaaAGACATCCAAAACAAGATCTGAATCTACACATGCTTTTGTAGGGATACACAATTTATATCAGTAACAGATATCA

Function

GO:

id name namespace
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:1905879 regulation of oogenesis biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0016442 RISC complex cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0052744 phosphatidylinositol monophosphate phosphatase activity molecular_function
GO:0035198 miRNA binding molecular_function
GO:0004438 phosphatidylinositol-3-phosphatase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006118 lncRNA downstream 96769 38313623 ~ 38316161 (-) True XLOC_002965
TCONS_00005462 lncRNA downstream 244852 38073682 ~ 38168078 (-) False XLOC_002962
TCONS_00006117 lncRNA downstream 262747 38050967 ~ 38150183 (-) False XLOC_002962
TCONS_00005459 lncRNA downstream 262935 38040366 ~ 38149995 (-) False XLOC_002962
TCONS_00006121 lncRNA upstream 80813 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00005474 lncRNA upstream 80813 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00005778 lncRNA upstream 232898 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00006122 lncRNA upstream 656230 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005520 lncRNA upstream 2058542 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005466 mRNA downstream 96796 38256556 ~ 38316134 (-) False XLOC_002965
TCONS_00005464 mRNA downstream 169079 38168158 ~ 38243851 (-) False XLOC_002964
TCONS_00005465 mRNA downstream 169351 38171041 ~ 38243579 (-) True XLOC_002964
TCONS_00005458 mRNA downstream 925252 37485403 ~ 37487678 (-) False XLOC_002959
TCONS_00005455 mRNA downstream 1075351 37334270 ~ 37337579 (-) True XLOC_002956
TCONS_00005471 mRNA upstream 1996 38433091 ~ 38443312 (-) False XLOC_002967
TCONS_00005473 mRNA upstream 17179 38448274 ~ 38468847 (-) True XLOC_002967
TCONS_00005475 mRNA upstream 538334 38969429 ~ 39011514 (-) True XLOC_002971
TCONS_00005476 mRNA upstream 597236 39028331 ~ 39055620 (-) False XLOC_002972
TCONS_00005477 mRNA upstream 597236 39028331 ~ 39091894 (-) False XLOC_002972
TCONS_00005468 other downstream 36677 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 96860 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 338539 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 340762 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005460 other downstream 361164 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005472 other upstream 3288 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005497 other upstream 1943915 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 1952687 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005503 other upstream 1972899 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 1987712 40418807 ~ 40419059 (-) True XLOC_002993

Expression Profile

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