RNA id: TCONS_00005461


Basic Information

Item Value
RNA id TCONS_00005461
length 92
RNA type miRNA
GC content 0.47
exon number 1
gene id XLOC_002963
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38072077 ~ 38072168 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGCATCCAGGCTGAGGTAGTAGGTTGTATGGTTTCGAATGACACCATGGGAGTTAACTGTACAACCTTCTAGCTTTCCTTGGAGTACAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000118603

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006116 lncRNA downstream 19106 38050967 ~ 38052971 (-) False XLOC_002962
TCONS_00006103 lncRNA downstream 46110 37729311 ~ 38025967 (-) False XLOC_002960
TCONS_00006104 lncRNA downstream 46191 37778486 ~ 38025886 (-) False XLOC_002960
TCONS_00005776 lncRNA downstream 46281 38020456 ~ 38025796 (-) True XLOC_002960
TCONS_00005775 lncRNA downstream 182516 37865419 ~ 37889561 (-) True XLOC_002961
TCONS_00005462 lncRNA upstream 1514 38073682 ~ 38168078 (-) False XLOC_002962
TCONS_00006118 lncRNA upstream 241455 38313623 ~ 38316161 (-) True XLOC_002965
TCONS_00006119 lncRNA upstream 340762 38412930 ~ 38430658 (-) False XLOC_002967
TCONS_00006120 lncRNA upstream 340762 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00006121 lncRNA upstream 439740 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00005458 mRNA downstream 584399 37485403 ~ 37487678 (-) False XLOC_002959
TCONS_00005455 mRNA downstream 734498 37334270 ~ 37337579 (-) True XLOC_002956
TCONS_00005452 mRNA downstream 996716 36950773 ~ 37075361 (-) False XLOC_002954
TCONS_00005453 mRNA downstream 999301 36953619 ~ 37072776 (-) True XLOC_002954
TCONS_00005451 mRNA downstream 1144483 36828069 ~ 36927594 (-) True XLOC_002953
TCONS_00005464 mRNA upstream 95990 38168158 ~ 38243851 (-) False XLOC_002964
TCONS_00005465 mRNA upstream 98873 38171041 ~ 38243579 (-) True XLOC_002964
TCONS_00005466 mRNA upstream 184388 38256556 ~ 38316134 (-) False XLOC_002965
TCONS_00005469 mRNA upstream 358191 38430359 ~ 38456382 (-) False XLOC_002967
TCONS_00005470 mRNA upstream 358191 38430359 ~ 38498072 (-) False XLOC_002967
TCONS_00005460 other downstream 20311 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005456 other downstream 714774 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005438 other downstream 1389563 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005427 other downstream 1569746 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 1908783 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005463 other upstream 2144 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005467 other upstream 218719 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005468 other upstream 303966 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005472 other upstream 362215 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005497 other upstream 2302842 40375010 ~ 40375996 (-) True XLOC_002983

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU493197 True 1076 lncRNA 0.36 1 CI01000304 18367718 ~ 18368793 (+)