XLOC_002971 (pcp4a)


Basic Information

Item Value
gene id XLOC_002971
gene name pcp4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38969429 ~ 39011514 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005475
GCACAAACCCACGCAGCGCGCGGACTGAAGGACTGACTGCATCACCGCCGCTCTTCTGCCCAATCCAGCCTTCTTCCTTCATCTTCATACTCTTCATCCAGCATGAGTGAGagACAAGAATCCGGATCCGCTGGAAGCATCAAACCCTCAGGTGGACAAGACCCATCCAAGAAGGACGTCCCGGCTGAGGACTTCGACATCGACATGGGGGCCCCCGAGACGGAGAAAGCTGCCGTGGCCATCCAGTCGCAGTTCAGAAAGTTCCAGAAGAAGAAGCAGACGGTGAAATCATAACCGTGTTCATCTGCGGCCCCACATTTAGGGCAGGGGGATGCATGTCAGAAAAATGGCTCTGTTCACGGGGCggggaataaaataataaatcatgaaATTTCGGTTCCCCACAGCACCAACATTTTTTCAATATAATACTTTTTCCCTTCTGAAATAGCctgcttttgttatttttttaataagtgtGTCTCATTAACGTCAAAGGTGTTTAAATAAGCAAAAACATCCACCTAAAAGTGtgattgtattattgtattaattgGCAGCGTGGCTCAAGGAAAACATCATGCTTGACATTAGGATTTGAATGGACTTATTAatctttctgttttgttttattgagtTATTTTTGTCTGTATAGATGAACTGATGTTTGTGGTTTGTCATTATCCTTCTGCCTACGTCAATGTTTTTGTCGGTGTATTATAATATTCCTGATTCCCACCAATCTGTTGGAAATAATTATGTGAGCTGAATAAATATTGGGAAGACCTCAGTGA

Function

symbol description
pcp4a Predicted to enable calcium ion binding activity and calmodulin binding activity. Predicted to be active in cytoplasm. Is expressed in nervous system. Orthologous to human PCP4 (Purkinje cell protein 4).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005516 calmodulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-105 Predicted to enable calcium ion binding activity and calmodulin binding activity. Predicted to be active in cytoplasm. Is expressed in nervous system. Orthologous to human PCP4 (Purkinje cell protein 4).

Ensembl:

ensembl_id ENSDARG00000053130

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005475 True 794 mRNA 0.43 3 38969429 39011514

Neighbor

gene id symbol gene type direction distance location
XLOC_002970 NA coding downstream 305195 38663993 ~ 38664234 (-)
XLOC_002969 NA coding downstream 442719 38511908 ~ 38526710 (-)
XLOC_002967 NA coding downstream 471357 38412930 ~ 38498072 (-)
XLOC_002968 BX000451.3 coding downstream 534930 38434383 ~ 38434499 (-)
XLOC_002966 CU914142.1 coding downstream 593176 38376134 ~ 38376253 (-)
XLOC_002972 igsf5a coding upstream 16817 39028331 ~ 39091894 (-)
XLOC_002973 NA coding upstream 75811 39087325 ~ 39090088 (-)
XLOC_002974 rps25 coding upstream 114123 39125637 ~ 39130935 (-)
XLOC_002975 slc37a4b coding upstream 121896 39133410 ~ 39154778 (-)
XLOC_002976 b3gat1b coding upstream 166936 39178450 ~ 39198942 (-)
XLOC_002983 AL953903.2 non-coding upstream 1363496 40375010 ~ 40375996 (-)
XLOC_002985 AL953903.1 non-coding upstream 1372268 40383782 ~ 40384432 (-)
XLOC_002989 AL953903.3 non-coding upstream 1392480 40403994 ~ 40404331 (-)
XLOC_002993 BX530037.4 non-coding upstream 1407293 40418807 ~ 40419059 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G386510 NA unknown CI01000197 null 179684 ~ 179788 (-)