XLOC_002976 (b3gat1b)


Basic Information

Item Value
gene id XLOC_002976
gene name b3gat1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39178450 ~ 39198942 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005485
tatatatatatatatatataagcagcaCAACATAGCCTCATCCTAAGTATCTACACAAATACTTTCtttctgtgtttgtttcttttagaTTACGATGCTCCTCTGTCAGAAGCAGGAGATTATACACCGAAGTACCATCTTCTCAGAGATCTCTTCAGCAATTTCAACAAAGAAATCCTCCCTGAGATGCCTGGTCTGCGCTGGAAAGAACAATATGAGGCTGCTATATTATTCCAGCATCTTTCACTATGGGATGCTTTGCCATTCACACATGAGCCTTTTAGAGCTCAGTTCCCTGTTAATATGGAGAGTCTGCCGGTCAACAACGGAAACGGTCAGGCGTACGGATACACGCTTTATGAGACCAGCATCACCCGAGGAGGCTCTTTAAAATCAGGAGGAAACGTCCAAGACAGAGCTCTGGTGTTTGTGAACCAAAGTTTCATCGGCAGTTTTCACCACAGGAATTTGGAATTAGCTGTACCTGATGGAAAGggGAAACGCACTCTGAGTCTTCTGGTGGAGAACTGTGGCCGTGTGCATTCTGGTAAAGAAATGGATAACCAGCGCAAAGGAATTGTTGGGGACATTTTATTAAACCGCACGCCACTTAGAGACTTCACCATATATAGTCTGGATATGACCCCTGCCTTTATTAACagCTTGTACAGGGCGAACTGGAAGACTGTCCCTAGCAAACCGAGCTTCCCAGGCTTTTTCCAGGGCAGGTTATTTGTGAATGGATATCCCAGCGACACTTTCATGAAGCTTCCGGGTTGGAGTAAAGGTGTAGTGTTTGTTAATGGGCAAAACATTGGCAGATATTGGGACGCTGGACCACAGCAAGCTCTGTTTCTACCAGGACCCTTCctcaacagtggaatgaaccaaGTGATTGTGTTCGAAGAAGCAGAAGCggatttaaaaacacaattcgaAGATTCTCCTGATCTGGGAATGACGGTTGACATTTAATGAACACATTTTATGCAAATCATCTTATGCAGGCACAGGACTGTACACTCGCAGGCATAAACTCTATTAAAGTGGCCATAAAAGaaacacaacaataaaataaatggcaCAGATAAATTGTTAAAGCAGTCATAGCAAACTTGTATTAATAACATGGCTTCACATTCCATgcctttttaaacacatttttaaaacatttttatgacAAAGTGCAGTCTAGCAGTTGACCGTGTGTGTAGTTTTGCATTCAAATGCTCGTTTTAACAGTAGTGAGTGTGTTTGCGTTTGTTAGCATTGTATTGTTTTGATTGTCGCTCATACTGTTTCTTGCTGGAAGTAGTGGTGGAGGTacattttgatgtatttttatatGAACACTTTGACAGCTGCGCTGgctatttatattaatattagagtgTCTACTGTAGAGACCAGCcttatcattttgttttgccttctgagaataaaaaaatgtttaaattgatTTATGTCAAATGACTGTATTTATGGTGTGAAGTTTGTGCAAATTAAACGTGTCGCTTGTTTGTGCTACAGTCATTTTGCCTAAAGATTTCATCTGCCAAACAAAACATCACACTGATGGGCAGTAACTGAGCAagttgcatatttatgaatcacTAGTTCAAATGATTAGTTTAGAGTCAGTCCTCAGTTTACGAATCACAAgtagttcagagtgagtcttcggTTCATGAATCACTAGTTCCAATGATTAGGTCAAAgtgaagctgcgtcccaaatcgcatacttatgcactattcttcgccattttgtagtataaatagtgtaagtagtgtgttcacactgaaaactctaaaaacattaagtgcactttaattacccggatgatgcactcattcagccggttaaatgaagtgtggaatgatggacacttcacgcactcaacgaccgcaggtttgcttacgtagcggaaggggcggagctatcggacgcacatgttggataactttatttattttggatggtaaaaGCAAAGTTCtactatgagagtgattatagcgcctcccgatggttaatgcggcaatactcacggcaggtattacttgataattcggttgtttatttcactgatttggcaaccgtcaaacgtcatcagggaaacggtttgaatttccgcttagtaaaaaaacattagtgtgccatttgggacaacactacatacatatactatcctgttgagtgtgtaagtgcataagtacatagtgcatgagtgcatagtgtatagtgtgccatttgggacgcagcttgagtCTCCAGTTTACGAATCACTGGTTAAAAtgattcagagtgagtctccatttCACAAATCACTagttcaaatgattcattcagagtgagtcccCGGTTTATGAATCACTagttcaaatgattcattcagagtgagtctccagttcaTAAATCACTAgttcaaatgattcgttcagagtgagtctctggttCACGAATCACTAgttcaaatgattcgttcagagtgagtctctggttCACGATTCATTAGTTCAGAGTAAGTCTCCGGTTCACGAATCACTTGAAGTTCAGAGTAAGTCTCCGGTTCATGAATCACTAGTTCAGAGTAAGTCTCTGGTTCACGAATCACTTGTAGTTCAGAGTAAGTCTCTGGTTCATGAATCACTAGTTCAAATGATTAGTTCAGAGTGTGTCTCAGGTACACGAATCACTAgtagttcagagtgagtctccggtTCACGAATCACTAGTAGTTCAGAGTAAGTCTCTGGTTCATGAATCACTAGTTCAGAGTGAGACTTTGGTTCACGAATCACTAGTTCAGAATTAGTCTCGGGTTCACAAATCACTAGTTCAGAGCGAGTCTTGAGTTTACGAATTActagttcagagtgagtctccagttcaCAAATTACTAGTAGTTCAGAGTAAAcctgtgtcccaaatggcacactatgcactcatgcactatgtacttatgcacttacacactcaacaggatagtacatgtatgtagtgtcgtcccaaatggcacactaatgtttttttactaagcggaaattcaaaccgtttccctgatgatgtttgacggttgccaaatcagtgaaataaacgaccgaattatcaaataatacctgccgcgaGTATTGCCGCactcaccatcgggaggcgctaaaatcactctcgtaggagaattttgctttcacaatccaaaataaataaagttattcaacatgtgcgtctgatagctccgccccttctgctacgtgagcaaacctgcggtcgttgagtgcgtgaagtgtccatcattacactcttcattttagcggctgaataagtgcatcatccgggtaattaaagtgcacttattatttttagagttttcagtgtgaacgcactacttacactatttgtaccacaaaatggcgtagaatagtgcataagtatgtgatttgggacgcagcttaagtCTCTGGTTCATGAATCACTAGTTCAAATGATTagctcagagtgagtctccagttcaTGAATCACTAGTTCAAATGATTagctcagagtgagtctccagttcaTGAATCACTAGTTCAAATGATTagctcagagtgagtctccagttcaTGAATCACTAGTTCAAATGATTAGCTCAGAGTGAGTCTTTGGTCTCCGAAATCTACCAATGGCCCACGCATCCTCCTGTTTCTGTAGAAATAAATAGATATTAAAACTAACATGTTTGCATAGCGTTCTTCCAATACTGTTACCCTAATTTGCTCAGTAGCAATCTGTTTTAATATTGTCTGTTTAGATTTGCcagcacacatttacacacattttattttgaatatttgttttgctatatgatatatttttacttgtttgCGCACTTGAATTTTCAACAGTAGCTGTcagttttacaaaacaaataaacattcatCAATCAGTACTATTTTAAATagtagattaaaaaaattaacagacCTACCTAATACTTTGACTGGagtaaaacagtttattaatgtGTCCTTGTGTACTACTTTGTATATCCATAACCGCTGAACTCTCAGAGAAACATGTGCTTAGCTAAAATTGTCAAACTGAAATGTCAAACTGGTCTGAGATCATCCGAGTGGACAGAATTATATTGTGAAGCTAACAAAAACAGAGCTGATGCCAATCTGACTGCCAAATATCAGTAGACTAACTGTGTCTTCTGGCAGTTAGTGCTGACTCAGACCAGACTGTGATTCAATGCAGAGGTCGAGTAGTTATTTCCCTCCATGAGAATGACTGTTCTCCATTGCATTTTTCTGGGATAAATGAAGATGTTATAAAGATACAAGGCTTTTGACTGCAGGAATTGTACTTCGTAAGGAGTTGTTCTCAATGTTTCCAGCCGGACACTTTAAATTCAGTGCAATAAATAATCAGGATTTGTCATGATACTCTGTATTATTCTGCTTAAAAACAACATAGAAACAGTTCATCATACTTCCACCCTGCCATCTGTGAATCCTTTTTTTCCTTCATTCACTAGCAAGGGTCTTTCTGTTCGAGTGTGCCAAACCAGAACCTGAAAATAAAGACGAAATGagttcaaatgatctggtcaaagCAAGTTAAGAGTTCACGAATCACTAGTTCAAATGATTTGctcagagtgagtctctggttGATGAATCGCTAGTTCAAATGATTCGTTTAGAGTAAGTCTTCAGTTCATGAATCATTAGTTCAAATGAttagtttagagcaggggtgtcaaactcaattcctggagggccgaagccctgcacagtctagttccaaccctgctccaacacacttacctgtaggtttcaaacaagcctgaaggactcaattagtctgatcaggtgtgtttaattagggttggaactaaactgtgcagagctgcggcccttttggaactgagtttgacacctgtggtttagagTGAGTCTCAGGTTCATGAATCACTagtttaaatgattcattcagagtaagTCTCCAGTTCACGAATCACTAGTTCAAATGAttagttcagagtgagtctctggttCACGAATCACtagtttaaatgattaattcagagtgagtctccagttcaTGAATCACTAGTTCAAATGATTAGTCAGAGTAAGTCTCTGGTTCATGAATCACTACTTTAAATGATTCGTTTGGGGTGAGTCTCTCATTCACTaatcactaattcaaatgattcgttcagtGTGAGTCTCTGATTCGCAAATCACTagttcaaatgatttgttcagtgtGAGTCTCTGATTCACAAATCACTAGTTCAAATGATTTAATCAGTGTGATTCTCCGGTTCATGAATCACAAgttcaaatgattcgttcagagTAAGTCT

Function

symbol description
b3gat1b Predicted to enable hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human B3GAT1 (beta-1,3-glucuronyltransferase 1).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131101-1 Predicted to enable hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human B3GAT1 (beta-1,3-glucuronyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000055279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005485 True 5356 mRNA 0.39 9 39178450 39198942

Neighbor

gene id symbol gene type direction distance location
XLOC_002975 slc37a4b coding downstream 23672 39133410 ~ 39154778 (-)
XLOC_002974 rps25 coding downstream 47515 39125637 ~ 39130935 (-)
XLOC_002972 igsf5a coding downstream 86556 39028331 ~ 39091894 (-)
XLOC_002973 NA coding downstream 88362 39087325 ~ 39090088 (-)
XLOC_002971 pcp4a coding downstream 166936 38969429 ~ 39011514 (-)
XLOC_002977 cry5 coding upstream 65860 39264802 ~ 39283883 (-)
XLOC_002978 smtlb coding upstream 115636 39314578 ~ 39321367 (-)
XLOC_002979 taar20i coding upstream 1132249 40331191 ~ 40366397 (-)
XLOC_002980 taar20h coding upstream 1148138 40347080 ~ 40348132 (-)
XLOC_002981 taar20f coding upstream 1152256 40351198 ~ 40352250 (-)
XLOC_002970 NA non-coding downstream 514216 38663993 ~ 38664234 (-)
XLOC_002969 NA non-coding downstream 651740 38511908 ~ 38526710 (-)
XLOC_002967 NA non-coding downstream 680378 38412930 ~ 38498072 (-)
XLOC_002983 AL953903.2 non-coding upstream 1176068 40375010 ~ 40375996 (-)
XLOC_002985 AL953903.1 non-coding upstream 1184840 40383782 ~ 40384432 (-)
XLOC_002989 AL953903.3 non-coding upstream 1205052 40403994 ~ 40404331 (-)
XLOC_002993 BX530037.4 non-coding upstream 1219865 40418807 ~ 40419059 (-)
XLOC_003000 BX530037.2 non-coding upstream 1269430 40468372 ~ 40469394 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location