RNA id: TCONS_00005483


Basic Information

Item Value
RNA id TCONS_00005483
length 936
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_002975
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39133410 ~ 39154778 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTAAGCCTCCTCTGTTCCAGTCAGGAGTGATTTGTTTTGGTTACGAAAGTCTATTTGAATGGTGCAGAGGCACATTGTAATAGTGTTTTGCCCATTGTTTTTGctcaaatgctttttttttgtttgcagacTTATTTCTCAGCTACTCGAATAGAGATGTAAACTGACTCTGAGATGTTTTCCAGGCACATCACAGTGAATGCCGGCTGAAGAAAACCTCCGTTCAGCTTTGAGGAACCAGGAGAGGAGCTGAAAACAGAAGCCGGATGAAATGATCTTGACCTGTGGATCAGTTTTGGAATGTGTCGTAATCTAGGTTATCAGATCTGATAGATTTCAAGTGCTCCATTTCccccaaattttatttatttttttgctcttatttattatcattttataatcTTACATCTGCAATCATGGGAGCAGCAGGTTACGGATATTATCGCACCGTTATATTCATCTCTATGTTTGTGGGATACATGCTTTACTACTTCAACCGGAAGACTTTTTCCTTTCTGATGCCATCCGTGATGGAGGAGATTGAGCTGGATAAAGAAGAGCTTGGACTGATCACCAGCAGTCAGACTCTGGCCTATGCTATCAGTAAGTTCATCAGCGGAGTGCTTTCAGACCGGATCAGCGCTCGCTGGCTCTTCTCCATCGGCCTCTTCATTGTTGGTACCATAAACATCGCCTTCTCCTGCTCCTCCACGGTCATGCTGTTCACCGTGCTTTGGTTTGTGAATGGATTCGGTCAGGGCTTCGGCTGGCCACCGTGTGGAAAGGTGCTCCGGAAGTGGTTTGAACCGTCTCAGTTTGGGACGTGGTGGGCCATCCTATGCTGCAGTATGAATCTGGCAGGTAGTCTGGGCCCCATCATCACTACAGTGCTGGTCCAGTATTATGACTGGAGGGTCATCATGTCCGTGTCTGG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-827 Predicted to enable symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in myotome. Orthologous to human SLC37A4 (solute carrier family 37 member 4).

Ensembl:

ensembl_id ENSDART00000150193

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006122 lncRNA downstream 53824 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005778 lncRNA downstream 479678 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 617202 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 628381 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 712817 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 1335678 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 1344200 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 1467022 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 1697178 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 2214149 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005479 mRNA downstream 12977 39125637 ~ 39130935 (-) False XLOC_002974
TCONS_00005480 mRNA downstream 13073 39125639 ~ 39130839 (-) True XLOC_002974
TCONS_00005477 mRNA downstream 52018 39028331 ~ 39091894 (-) False XLOC_002972
TCONS_00005476 mRNA downstream 88292 39028331 ~ 39055620 (-) False XLOC_002972
TCONS_00005478 mRNA downstream 91648 39030775 ~ 39052264 (-) True XLOC_002972
TCONS_00005485 mRNA upstream 24491 39178450 ~ 39198942 (-) True XLOC_002976
TCONS_00005486 mRNA upstream 110843 39264802 ~ 39281475 (-) False XLOC_002977
TCONS_00005487 mRNA upstream 114564 39268523 ~ 39283883 (-) True XLOC_002977
TCONS_00005488 mRNA upstream 160619 39314578 ~ 39321367 (-) True XLOC_002978
TCONS_00005489 mRNA upstream 1177232 40331191 ~ 40366360 (-) False XLOC_002979
TCONS_00005472 other downstream 709413 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 767659 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 827842 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 1069521 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 1071744 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005497 other upstream 1221051 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 1229823 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005503 other upstream 1250035 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 1264848 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 1314413 40468372 ~ 40469394 (-) True XLOC_003000

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU442300 True 1377 TUCP 0.43 2 CI01000197 243924 ~ 247707 (-)
mexican tetra (Astyanax mexicanus) TU442300 True 239 lncRNA 0.34 2 NW_019172890.1 892069 ~ 944296 (-)