XLOC_002991 (taar20n)


Basic Information

Item Value
gene id XLOC_002991
gene name taar20n
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40409832 ~ 40410884 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005505
ATGAAAAGACAGAAaggagagcagaacaaactcctGACAGGAGGAGACTCACTCATGGCCTACGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAAGAAAAACACTCAAGTAATGGATAtatcataatttatttgtttgcatcattgctgtcagcatggactgtgattctgaacctgctggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGTTTATTGGACTTGTCATGCCTGTAGATGCCATCAGAGTAATTGAGACGTGTTGGTACTTTGGAGACACTTTCTGTGgactctatttattatttatttcattgctTCTCCCAGCATCTCTtggtaatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGTCACCCTTTACTGTACCCACAGAAAATAAGCATCTCTAAAGCATTCATGAGCATCTGTCTGAACTGGGTTTGTTTATCAGCATATAACACTGCCTTTATAATTAATAATGGATTTTTGGACACTTCTCAGAGAACAGATGTGTGTTATGGACAGTGTTCATTCACAGTAAGTTTTAGTTGGATGCTCACTGATCTGTTTGTGTCCTTCATTTTTCCTTGTATGCTTATCATCACTTTATATTTGAGGATTTTCTATGCTGTACATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAATGAAGAGTTCAGTGAAGAGGAAATCTGAGCGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCTGTTTATCTGCTTTGCTATATTCCATACTGCATCTGTTCTCTAACTGGAGTCTCTGCCTcaactaaaaatgttttaatgtggaTTTTGTATGCTAACTCAggtgtgaatcctctggtttatgctttattttacccctggtttaaaaagacagctaaactcatcttaACTCTAGAAATATTTCAGTCGGTGTCCTCACTTATCaacatttttacagaaaattaa

Function

symbol description
taar20n Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-53 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000111859

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005505 True 1053 mRNA 0.38 1 40409832 40410884

Neighbor

gene id symbol gene type direction distance location
XLOC_002990 taar20i coding downstream 3518 40405283 ~ 40406314 (-)
XLOC_002989 AL953903.3 coding downstream 5501 40403994 ~ 40404331 (-)
XLOC_002988 taar20t coding downstream 6928 40401858 ~ 40402904 (-)
XLOC_002987 taar20o coding downstream 12469 40396302 ~ 40397363 (-)
XLOC_002986 taar20c1 coding downstream 21567 40387210 ~ 40388265 (-)
XLOC_002992 taar20j coding upstream 4178 40415062 ~ 40416084 (-)
XLOC_002993 BX530037.4 coding upstream 7923 40418807 ~ 40419059 (-)
XLOC_002994 taar20w coding upstream 9168 40420052 ~ 40421059 (-)
XLOC_002995 taar20r coding upstream 17811 40428695 ~ 40429747 (-)
XLOC_002996 taar20q coding upstream 31810 40442694 ~ 40443746 (-)
XLOC_002985 AL953903.1 non-coding downstream 25400 40383782 ~ 40384432 (-)
XLOC_002983 AL953903.2 non-coding downstream 33836 40375010 ~ 40375996 (-)
XLOC_002973 NA non-coding downstream 1319744 39087325 ~ 39090088 (-)
XLOC_002970 NA non-coding downstream 1745598 38663993 ~ 38664234 (-)
XLOC_003000 BX530037.2 non-coding upstream 57488 40468372 ~ 40469394 (-)
XLOC_003004 NA non-coding upstream 78753 40489637 ~ 40490637 (-)
XLOC_003005 NA non-coding upstream 87275 40498159 ~ 40499209 (-)
XLOC_003009 BX530037.3 non-coding upstream 105865 40516749 ~ 40517598 (-)

Expression


Co-expression Network